Aluc018974.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019170.2:7754609-7757897[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00089 0.074 13.7 1.5 1 23 99 121 99 121 0.98 2 23 0.01 0.86 10.3 1.7 1 23 127 149 127 149 0.97 3 23 0.0001 0.0083 16.6 3.3 1 23 155 177 155 177 0.98 4 23 0.00027 0.023 15.3 1.2 1 23 183 205 183 205 0.98 5 23 0.0014 0.11 13.1 1.1 1 23 211 233 211 233 0.98 6 23 9.2e-05 0.0076 16.8 0.1 1 23 239 261 239 261 0.97 7 23 0.00045 0.037 14.6 0.4 1 23 267 289 267 289 0.98 8 23 3.2e-06 0.00026 21.4 3.1 1 23 295 317 295 317 0.98 9 23 9e-06 0.00075 19.9 1.1 1 23 323 345 323 345 0.98 10 23 0.00011 0.0094 16.5 0.5 1 23 351 373 351 373 0.97 11 23 0.0014 0.12 13.1 0.0 1 22 379 400 379 400 0.95 12 23 0.011 0.93 10.2 0.5 1 23 407 429 407 429 0.97 13 23 0.028 2.4 8.9 0.5 1 23 435 457 435 457 0.95 14 23 0.00061 0.05 14.2 0.3 1 23 463 486 463 486 0.97 15 23 0.0022 0.18 12.5 0.2 1 23 492 514 492 514 0.98 16 23 0.00032 0.027 15.1 1.1 1 23 520 542 520 542 0.98 17 23 0.045 3.7 8.3 0.9 1 23 548 570 548 570 0.96 18 23 0.044 3.6 8.4 0.1 1 23 576 599 576 599 0.91 19 23 0.00013 0.011 16.3 0.6 1 23 604 626 604 626 0.98 20 23 4.8e-05 0.004 17.7 0.2 1 23 632 654 632 654 0.98 21 23 0.0015 0.13 12.9 2.1 1 23 660 682 660 682 0.98 22 23 0.00016 0.013 16.0 2.2 1 23 688 710 688 710 0.98 23 23 0.94 78 4.2 0.2 1 23 716 739 716 739 0.88
Sequence Information
- Coding Sequence
- ATGGGAGACGAAATTGAAGTGAAAGAAGAGCCGATGAGTGAAGGAGAGGAGACTGAAGGCGATCAGGAGACGTTTGAAGTTGTGATGATCAAACAAGAGAAGCTGATCGGGGATGACGAAGAGGTCGAAAATAGcgagagattcgaagatgaaGGTGTGGGGTATCCGATGATCAAACAGGAGCTCGAGTCAACTGATCCAGTCGGTGATGAGAGTGTCGTTCCGCAAGGATCTATTGGAGGACAGAAATTGTCTGAGGCAGGACCTTCGAGTGAGTTGAAGACTCTGCGGACTTTTTCATGTGACagctgtgattacagaacctcgcaGCTTCGATATTTGAAAGACCACGCGCGTACTCACACTGGGAAGAAACCCTACGCCTGTGAACAATGTGATTACAAAGCTTCACGTCTGGATCGTATGAAACAGCACATGTGTATTCACACTGGGGAAaaaccctacgcctgtgataaatgtcaTTTCAGATCCTCGCAGCCACGATATCTGAAAGAGCACATGCGTACTCACACAGGGGAAAAACCCTACGCCTGTGAACAATGTGACTACAAAGCTTCACGTCCGGATCGTTTAAAAGAGCACATGTgcactcacactggggaaaaaccctacgcctgtgatcaATGTGATTACCGGTGTGCGTTTGGAAGAGATCTGAGGAGGCACATAataacacacactggggagaaaccctacgcctgtgatcaATGTGATTACCGTAGTGCGGATCAAGGAGCTCTGAAGAAGCACATATTAAGACACACTGGAGAGAAACCCTACGCCTGTGAacaatgtgattacagagcctcccagccaaatattttgaaaaagcatatgaggactcacactggagagaaaccctatgcctgtgatctATGTGATCACCGGTTTGCACACCAAGGAGATTTGAAGAAGCActtgaggacacacactggggagaaaccTTATGCCTGTGAGatctgtgattacagagccacGCAGCAAAGACACTTGAAAGATCACATGAGgattcacactggggagaaaccATTTGCCTGTGATCAATGTGATTTCCGAAGTGCTTTTCAATCAgctctgaagaagcacatgagggctcacactggagagaaaccCTACGTCTGTGAtcaatgtgattacagagcctcgcaacCTTTAGACCTAAAGAGACACATAATTACATGCAGCggggagaagccctatgcctgtgatcaATGTGATTACTGGTGTGTGCTTCAAGGAGCTCTGAAGGAGCACATGAAgactcacactggagaaaaACCCTACGcttgtgataaatgtgatttcaGAGCTTTGCGTATTAGAAATTTGAAAgatcacatgatgactcacactggggagaaaccgtacccctgtgatagatgtgattacagagcctcacgaCTGGAATACTTGAAAGAGCACATCAAGCGTGTCCACACTTTGGAAaaaccctacgcctgtgatcgATGTGATTACCGGAGTGCGCTCCAAGCGGATCTGAAGAATCACATAacgactcacactggggagaagcttTTCTCTTGTGATTTATGTGATTATAGGGCCTCTCAGTTAAGATCGTTGAGAAATCACATCAAGAaacacactggagagaagccttTCGCCTGTGATATATGTGAGTACAGAGCTACGGATCGTCGAAGGCTGAAGATCCACAAGTTTACTCACTCTGTGGAAAAACCTTACGCCTGTGAAGAATGTGATTTTCGGTCCGCTCTTCCAAGAGCCCTGAAGAAGCACAGGGACGCAGTGCATGGGGACAAGTTGTACGCCTGTAATATATGTGAATACAGATCCTCGCTAAAAGGACTTCTGAAGAGTCACATGaagacacacactggggagaagccttATGCTTGTAATAcctgtgattacagagccatAGACCGTGATGCCCTGAAGCGACACATGATTACTCACAGTGATTTAAAACCCTACGCTTGTAGTAGTTgcgattacagagcctcgcggctGAGATGTCTGAAAGTTCATAtcaggactcacactggggagaagccatATGCATGCGAGatgtgtgattacagagcctcaaagCTATCACATTTGAAGACACACCTAAAGACACACAcaggggaaaagccctacgcctgtgatacaTGTGATTACAAATCCTTGCTGAGTGGGGATCTGAAGAAGCACGTCTTAGAGTCTCACAGCATCACATCTCTGGAAGCCTCTGGTGTGACCTCCACACCCGAGTGA
- Protein Sequence
- MGDEIEVKEEPMSEGEETEGDQETFEVVMIKQEKLIGDDEEVENSERFEDEGVGYPMIKQELESTDPVGDESVVPQGSIGGQKLSEAGPSSELKTLRTFSCDSCDYRTSQLRYLKDHARTHTGKKPYACEQCDYKASRLDRMKQHMCIHTGEKPYACDKCHFRSSQPRYLKEHMRTHTGEKPYACEQCDYKASRPDRLKEHMCTHTGEKPYACDQCDYRCAFGRDLRRHIITHTGEKPYACDQCDYRSADQGALKKHILRHTGEKPYACEQCDYRASQPNILKKHMRTHTGEKPYACDLCDHRFAHQGDLKKHLRTHTGEKPYACEICDYRATQQRHLKDHMRIHTGEKPFACDQCDFRSAFQSALKKHMRAHTGEKPYVCDQCDYRASQPLDLKRHIITCSGEKPYACDQCDYWCVLQGALKEHMKTHTGEKPYACDKCDFRALRIRNLKDHMMTHTGEKPYPCDRCDYRASRLEYLKEHIKRVHTLEKPYACDRCDYRSALQADLKNHITTHTGEKLFSCDLCDYRASQLRSLRNHIKKHTGEKPFACDICEYRATDRRRLKIHKFTHSVEKPYACEECDFRSALPRALKKHRDAVHGDKLYACNICEYRSSLKGLLKSHMKTHTGEKPYACNTCDYRAIDRDALKRHMITHSDLKPYACSSCDYRASRLRCLKVHIRTHTGEKPYACEMCDYRASKLSHLKTHLKTHTGEKPYACDTCDYKSLLSGDLKKHVLESHSITSLEASGVTSTPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -