Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019175.2:156318-187265[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.053 4.4 8.1 1.3 2 23 27 48 26 48 0.95

2 29 6.9e-05 0.0057 17.2 0.9 1 23 54 76 54 76 0.98

3 29 0.00035 0.029 14.9 2.4 3 23 84 104 82 104 0.94

4 29 0.004 0.33 11.6 0.0 1 23 110 132 110 132 0.97

5 29 0.61 51 4.7 0.0 1 23 137 159 137 159 0.96

6 29 0.005 0.41 11.3 1.8 1 23 208 230 208 230 0.99

7 29 0.0027 0.22 12.2 3.7 1 23 236 258 236 258 0.96

8 29 0.011 0.91 10.2 0.4 1 23 264 286 264 286 0.97

9 29 4.3e-05 0.0036 17.8 0.9 1 23 292 314 292 314 0.98

10 29 0.00048 0.04 14.5 0.9 1 23 320 342 320 342 0.98

11 29 0.00037 0.031 14.9 2.6 1 23 348 370 348 370 0.99

12 29 0.0037 0.31 11.7 0.5 3 23 378 398 377 398 0.98

13 29 0.004 0.33 11.6 2.4 1 23 1176 1198 1176 1198 0.98

14 29 0.00015 0.013 16.1 0.5 1 23 1221 1243 1221 1243 0.99

15 29 0.0041 0.34 11.6 1.2 1 23 1249 1271 1249 1271 0.98

16 29 7e-07 5.8e-05 23.4 2.0 1 23 1277 1299 1277 1299 0.96

17 29 0.00035 0.029 15.0 0.8 1 23 1305 1327 1305 1327 0.98

18 29 0.0019 0.16 12.7 0.1 1 23 1333 1355 1333 1355 0.98

19 29 0.0035 0.29 11.8 0.4 1 23 1361 1383 1361 1383 0.97

20 29 0.00044 0.037 14.6 4.5 1 23 1437 1459 1437 1459 0.97

21 29 0.0011 0.093 13.4 2.7 1 23 1465 1487 1465 1487 0.98

22 29 0.00012 0.01 16.4 2.3 1 23 1493 1515 1493 1515 0.98

23 29 0.0099 0.82 10.4 0.3 1 23 1521 1543 1521 1543 0.97

24 29 0.028 2.3 9.0 0.3 1 23 1549 1571 1549 1571 0.97

25 29 0.11 9.1 7.1 2.5 1 23 1577 1599 1577 1600 0.92

26 29 0.1 8.5 7.2 0.4 3 23 1750 1770 1749 1770 0.96

27 29 0.00021 0.018 15.6 0.4 1 23 1776 1798 1776 1798 0.98

28 29 9.2e-06 0.00076 19.9 0.9 1 23 1804 1826 1804 1826 0.98

29 29 0.0044 0.36 11.5 2.0 1 23 1832 1855 1832 1855 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.053	4.4	8.1	1.3	2	23	27	48	26	48	0.95
2	29	6.9e-05	0.0057	17.2	0.9	1	23	54	76	54	76	0.98
3	29	0.00035	0.029	14.9	2.4	3	23	84	104	82	104	0.94
4	29	0.004	0.33	11.6	0.0	1	23	110	132	110	132	0.97
5	29	0.61	51	4.7	0.0	1	23	137	159	137	159	0.96
6	29	0.005	0.41	11.3	1.8	1	23	208	230	208	230	0.99
7	29	0.0027	0.22	12.2	3.7	1	23	236	258	236	258	0.96
8	29	0.011	0.91	10.2	0.4	1	23	264	286	264	286	0.97
9	29	4.3e-05	0.0036	17.8	0.9	1	23	292	314	292	314	0.98
10	29	0.00048	0.04	14.5	0.9	1	23	320	342	320	342	0.98
11	29	0.00037	0.031	14.9	2.6	1	23	348	370	348	370	0.99
12	29	0.0037	0.31	11.7	0.5	3	23	378	398	377	398	0.98
13	29	0.004	0.33	11.6	2.4	1	23	1176	1198	1176	1198	0.98
14	29	0.00015	0.013	16.1	0.5	1	23	1221	1243	1221	1243	0.99
15	29	0.0041	0.34	11.6	1.2	1	23	1249	1271	1249	1271	0.98
16	29	7e-07	5.8e-05	23.4	2.0	1	23	1277	1299	1277	1299	0.96
17	29	0.00035	0.029	15.0	0.8	1	23	1305	1327	1305	1327	0.98
18	29	0.0019	0.16	12.7	0.1	1	23	1333	1355	1333	1355	0.98
19	29	0.0035	0.29	11.8	0.4	1	23	1361	1383	1361	1383	0.97
20	29	0.00044	0.037	14.6	4.5	1	23	1437	1459	1437	1459	0.97
21	29	0.0011	0.093	13.4	2.7	1	23	1465	1487	1465	1487	0.98
22	29	0.00012	0.01	16.4	2.3	1	23	1493	1515	1493	1515	0.98
23	29	0.0099	0.82	10.4	0.3	1	23	1521	1543	1521	1543	0.97
24	29	0.028	2.3	9.0	0.3	1	23	1549	1571	1549	1571	0.97
25	29	0.11	9.1	7.1	2.5	1	23	1577	1599	1577	1600	0.92
26	29	0.1	8.5	7.2	0.4	3	23	1750	1770	1749	1770	0.96
27	29	0.00021	0.018	15.6	0.4	1	23	1776	1798	1776	1798	0.98
28	29	9.2e-06	0.00076	19.9	0.9	1	23	1804	1826	1804	1826	0.98
29	29	0.0044	0.36	11.5	2.0	1	23	1832	1855	1832	1855	0.94

Sequence Information

Coding Sequence: ATGCCTCAAAAACACGTGGCAGGCCACGTGGGCGACGTATTTGGTAACTCCAGAGGTTCGAAGGGTGAAAAACCACTGGTGTGCAATTTGTGCGACTACCGGTCTTTGCATGCGGGGAATCTCCGGCGTCATAAAAAGGTCCATTCGGACAATAAGCCTTACAGTTGCGACGTTTGCGgttttaaaactaaaaaaccGTACAGTTTGAAGATGCACATGATCACTCATACGGGCCAAAGACTCTTAGCGTGCGATCAATGCGATTATACGTGTAACCGGCCACAGCATTTGAAGCGTCATATGGTAGCTCATTCGGGAGAAAAGCCGTTTGCTTGTTCGATATGTCCGTATAGAGGGACGGATTTGATGTATTTGGTGGCTCACATGAAGATACATGCGGACAAACTGTACGCTTGTGACAAGTGTGACTACAAGGCGGTGGCAGCGTGGGATGTGAAACGTCACGCGAAGATTCACGACGTGAAGAGACCGCTTTCCCCGGAGAGTTTGGATTACGGAGTCCTACAGGATGCGAGGGAAGGTGTTTCCAGTGATCCTGAACTTGGATTAAATGTCCAAGATCCGAAATTGAGGGCTCGAAATCGTCGGAATCGAAAGCCGTACGTGTGTTACCATTGCGACAACCGAGCTCGAACACGGGGAGACATGAAGATACACTTGAGGACGCATACTGGGGAAAAGCCTCATGCGTGCAGTCTATGCAATTACAAATCGACGCAGCTGGGGCATCTCAGGCGACACATGACCGTCCACACAGGCGAAAAACCCTACGCTTGCGACATGTGCGGGTACAGAACGCAGTACTTGGCGAGTTTAAAGACGCATAAGATGATTCACACGAAAGAAAAACCGTACGCGTGCAGCGAATGTCAGTACAGGACGACGACTCTCGGAAGTTTGAAGCTGCACATGAGGACGCACACGGGCGAAAAGCCGTTCGTATGCCCCGTGTGTGGGTTCAGAACCAAGCAAGGGGGGCATATCAAGTTGCACATGAGGACGCACACGGGCGAGAAGCCGTATAAATGCGATTTATGTGATTACAAATCAGCTCGACTGTACCACCTCAAAGTGCACTTGATGAAGCACTCGGGGCAGAAACCCAACGCTTGCGATAAATGTGATTTCAGGGGAAGCACCGTCGGGGAGTTCAAACGGCACATGATGACGCACGAAGACGATTCCGGGAGCGAGGAGGAGGTGGCTATCGAAGGGCAGACGATTATCAAGGTAGAGCCAATGGGGGATGGGCTGGAGCGTGACTCTTCCACCACCACTGATAACCCACAAGAAGAGTGGTCAGTCAATGAATCCAATGAACCCTCAGGATTCTTGCAGAATTCTACATCTGACCCAAGTGCACTGGAAATGCATCAAAAGTGCCCCGAGATTGGACAGGAAACGGCTGACAATTCCAACTCTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGATGAAGAGTTCTTTGGATGAATCTAACCGAGCTGCAGGATTCTTACAAAGCTGCACTGCTGACCCAAGTGTGCTGGAATTGCATCAAAAGTGCCCTGAAATTGGACAGGAAACTGCTGGAACTTCCATCATTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGGTGAAGAGTTCTGTGGATGAATCCAACCGAGCTGCAGGATTCTTACAAAGCTGCACTGCTGACCCAAGTGTGCTGGAATTGCATCAAAAGTGCCCTGAGATTGGACAGGAAACTGCTGGAACTTCCATCATTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGATGAAGAGTTCTGTGGATGAATCTAACCGAGCTGCAGGATTCTTACAAAGCTGCACTGCTGAGCAAAGTGTGCTGGGAATGCATCAAAAGTGCCCTGAAATTGGACAGGAAACTGCTGGAACTTCCATCATTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGATGAAGAGTTCTGTGGATGAATCTAACCGAGCTGCAGGATTCTTACAAAGCTGCACTGCTGACCCAAGTGTGCTGGAATTGCATCAAAAGTGCCCTGAAATTGGACAGGAAACTGCTGGAACTTCCATCATTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGATGAAGAGTTCTGTGGATGAATCCAACCGAGCTCCAGGATTCTTACAAAGCTGCACTGCTGAGCAAAGTGTGCTGGGAATGCATCAAAAGTGCCCTGAAATTGGACAGGAAACGGCTGGAACTTCCATCATTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGATGAAGAGTTCTGTGGATGAATCTAACCGAGCTGCAGGATTCTTACAAAGCTGCACTGCTGAGCCAAGTGTGCTGGGAATGCATCAAAAGTGCCCTGAAATTGGACAGGAAACTGCTGGAAATTCCATCATTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGGTGAAGAGTTCTGTGGATGAATCCAACCGAGCTGCAGGATTCTTACAAAGCTGCACTGCTGAGCAAAGTGGGCTGGGAATGCATCAAAAGTGCCCTGAAATTGGACAGGAAACGGCTGGAACTTCCATCATTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGATGAAGAGTTCTGTGGATGAATCTAACCGAGCTGCAGGATTCTTACAAAGCTGCACTGCTGACCCAAGTGTGCTGGAATTGCATCAAAAGTGCCCTGAAATTGGACAGGAAACTGCTGGAAATTCCATCATTTGTGAAAGATTGTCTGGAGAACCTCATCACAGGGTGAAGAGTTCTGTGGATGAATCCAACCGAGCTGCAGGATTCTTACAAAGCTGCACTGCTGAGCAAAGTGTGCTGGGAATGCATCAAAAGGGCCCTGAAATTGGACAGGAAACTGCTGGAAATTCCATCATTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGATGAAGAGTTCTGTGGATGAATCTAACCGAGCTGCAGGATTCTTACAAAGCTGCACTGCTGACCCAAGTGTGCTGGAATTGCATCAAAAGTGCCCTGAAATTGGACAGGAAACTGCTGGAAATTCCATCATTTGTGGAAGATTGTCTGGAGAACCTCATCACAGGGTGAAGAGTTCCGTGGATGAATCCAACCGAGCTGCAGGATTCTCGCAGAGCTCCACATCTGACCCAAGTGTGCTGGAAATGCATCAAAAGTGCTCCGAGATTGGACAGGAAACTGCTGAAAATTCCACCACCTGTGGAGGATTGTCTGGAGAAGTTCATCACAGGATGGAGAGTTCATTTCATGAATCCAGCCAAGCTGCAGTATTGATGCAGAACTGCATGTCCGAGCCAAGTGTCCTGGAATTGCATCTAAACTGCCCTGAGATTGGAGAGTCATCAGCTTCAAATTCCATCATTGGCGAATCATCAGTAGCTCATCACAGATTGAAGATGGAGAGTTCAGGGGATGAATCCAATCAAGGATTGCTGAACGGCATCGCTGAACCAATTCCACAACTTTTCGAGTGTCATCAATGCGAGTTTAGAGGCAAAACTCTCATTGGTTTGAAGAGACACATGAAGATGCACGTTGGTGAGGCCTCTGATAGGTCCAATAACGCGGAAACTCCCAGAAAGTTGTATATAGGCGACATGTATGTCTGTGACTTATGCGATTTTAGAACGAAACAACTGAGATTGTTGACGGTGCATATGAGAGTCCACACGGGGGAAAAGCCGTATGCTTGCGACCAATGCAACTTCAGAACTGCGCAACTTGGAAGTCTCAAAACTCATAAAAGGAGGCACACGGGTGAGAAACCGTTCGCGTGCGATCAATGCGACAAGAGGTTTTCTCAGCGAGACCACCTCAGACGTCACATAATGGCGCACACAGGCGAGAAACCCTTTTCGTGCGACGTTTGCGATCACAGGTCGGCAGCTTTGAGCGACCTGAAACGTCATATGATGACTCATAGTGGGGAAAAGCCTTATGCGTGCGATGGTTGTGATTACAGGAGCGCCAACATGGAAGGCCTGAGAGTCCATGTGAGGACTCATACAGGGGAAAGGCCATTTGCCTGTACAATGTGTGACTACAGGGGGAAAGCTTCTGGGGATGTCAAACGTCACATGAAGACTCACTTGAATCAGCTGGTTATCAAGGAAGAGGTCGTCAATGAGCAGTCTTCAGCACCCCTAACTGTACCTGGAGATTCTCCACAACTCACCGGTCTATTACCTGAAGGCAGACACCTCAAGCTACCAGATAAATTGCTCAAATCGCCTAGAATTCGAATGCCATTCTTCTGTTACCACTGCGGCTACAGAGGTAGAACCAAACGTAACCTCAAAGTTCACATGAGTACGCACACGGGTGATATGCCTTTTTCCTGTGATCAATGCAGTTTCACGAGCAATAGGCTGGAAAATTTTAAACGCCATGttaggactcacactggagaaaGGCCATACGCGTGCGATCTATGCGACTACAGGACGACAACAAATGGGTGTCTCAAAGTGCATATGAGGAAGCATACAGGTGAAAAACCCTTTGCCTGTAGTTTTTGCCCTTATAGGGCGGCGGCGTCGAGGGATTTGAAACGTCACGTGAGGACACATACGGGTGAGAAGCCGTATGCTTGTGACATTTGCGACTACAGGGCTGCCGAGTTGCGTAATTTGAAAGAGCACAAAAGGTTTCACACTGGCGTGAGGCCCTATGCCTGCCATAGTTGTGACTACAAGGCTTTCGTGTCAGGAGATTTGAAGCGGCATGTCTTGAGGCATCACTCCAAGGAGATGCCGGCAGCTCATGATAGTTTGGTTTGTGAAATTGAGGGGGCTGAAAGTGAGCAGGAGTTGACGATTGGAGATCAGATAATCATCAAAGAAGAAGCGATGACTATTGATGATGAGCACAATCCAAATCTTGAAGCTTCCCTACCCAATGACCCACTATCAACTCCGGAGATGTCTGGAGATCAAATTATGGCGTCCTCTAGGGATGTACTCGAACCATCAGTGTACAAACCGCCTGAAGCTTACCAGTCAATAGAAGCCGGACAGCTGAAAAAGCTTATGTGGAGTCACGCTGAGGGTAAGTCATTTTCCTGCAATCTTACTGACTACCAAGAGGCAAACTTGGGATTCCAATCAATGATACACGAAAAACCAGACATTTGTGACTACGGAGGGCCCTCGAGGGATTTAAACTTCCAAGGCGGCAAACCAAATTCGTGTGGCAGTTGTGAGTACGAGGTATCAACTGTGAAGAGTTTGACACGTCATGTAAAAAGTCACTCTGGTGAAAAGGTGTTTGCTTGTAGTGATTGTGACTACAAGGTGGGGAGCACGAGGGATTTGAAAATACACATGAGGACGCACACCGGCGAGAGGCCCTACGCTTGTAACATTTGTGACTACAAGTCGAGGACTTCGTCGGGTTTGAATCGTCACTTGAAGACCCACTCAGTCGAGAAGCACTATTCCTGCAGCTTGTGTGACTACAGATGTCGGGCTCAAAGCGCACTGCGGAAGCACACAGTACGTGTGCATAATGGGTAG
Protein Sequence: MPQKHVAGHVGDVFGNSRGSKGEKPLVCNLCDYRSLHAGNLRRHKKVHSDNKPYSCDVCGFKTKKPYSLKMHMITHTGQRLLACDQCDYTCNRPQHLKRHMVAHSGEKPFACSICPYRGTDLMYLVAHMKIHADKLYACDKCDYKAVAAWDVKRHAKIHDVKRPLSPESLDYGVLQDAREGVSSDPELGLNVQDPKLRARNRRNRKPYVCYHCDNRARTRGDMKIHLRTHTGEKPHACSLCNYKSTQLGHLRRHMTVHTGEKPYACDMCGYRTQYLASLKTHKMIHTKEKPYACSECQYRTTTLGSLKLHMRTHTGEKPFVCPVCGFRTKQGGHIKLHMRTHTGEKPYKCDLCDYKSARLYHLKVHLMKHSGQKPNACDKCDFRGSTVGEFKRHMMTHEDDSGSEEEVAIEGQTIIKVEPMGDGLERDSSTTTDNPQEEWSVNESNEPSGFLQNSTSDPSALEMHQKCPEIGQETADNSNSCGRLSGEPHHRMKSSLDESNRAAGFLQSCTADPSVLELHQKCPEIGQETAGTSIICGRLSGEPHHRVKSSVDESNRAAGFLQSCTADPSVLELHQKCPEIGQETAGTSIICGRLSGEPHHRMKSSVDESNRAAGFLQSCTAEQSVLGMHQKCPEIGQETAGTSIICGRLSGEPHHRMKSSVDESNRAAGFLQSCTADPSVLELHQKCPEIGQETAGTSIICGRLSGEPHHRMKSSVDESNRAPGFLQSCTAEQSVLGMHQKCPEIGQETAGTSIICGRLSGEPHHRMKSSVDESNRAAGFLQSCTAEPSVLGMHQKCPEIGQETAGNSIICGRLSGEPHHRVKSSVDESNRAAGFLQSCTAEQSGLGMHQKCPEIGQETAGTSIICGRLSGEPHHRMKSSVDESNRAAGFLQSCTADPSVLELHQKCPEIGQETAGNSIICERLSGEPHHRVKSSVDESNRAAGFLQSCTAEQSVLGMHQKGPEIGQETAGNSIICGRLSGEPHHRMKSSVDESNRAAGFLQSCTADPSVLELHQKCPEIGQETAGNSIICGRLSGEPHHRVKSSVDESNRAAGFSQSSTSDPSVLEMHQKCSEIGQETAENSTTCGGLSGEVHHRMESSFHESSQAAVLMQNCMSEPSVLELHLNCPEIGESSASNSIIGESSVAHHRLKMESSGDESNQGLLNGIAEPIPQLFECHQCEFRGKTLIGLKRHMKMHVGEASDRSNNAETPRKLYIGDMYVCDLCDFRTKQLRLLTVHMRVHTGEKPYACDQCNFRTAQLGSLKTHKRRHTGEKPFACDQCDKRFSQRDHLRRHIMAHTGEKPFSCDVCDHRSAALSDLKRHMMTHSGEKPYACDGCDYRSANMEGLRVHVRTHTGERPFACTMCDYRGKASGDVKRHMKTHLNQLVIKEEVVNEQSSAPLTVPGDSPQLTGLLPEGRHLKLPDKLLKSPRIRMPFFCYHCGYRGRTKRNLKVHMSTHTGDMPFSCDQCSFTSNRLENFKRHVRTHTGERPYACDLCDYRTTTNGCLKVHMRKHTGEKPFACSFCPYRAAASRDLKRHVRTHTGEKPYACDICDYRAAELRNLKEHKRFHTGVRPYACHSCDYKAFVSGDLKRHVLRHHSKEMPAAHDSLVCEIEGAESEQELTIGDQIIIKEEAMTIDDEHNPNLEASLPNDPLSTPEMSGDQIMASSRDVLEPSVYKPPEAYQSIEAGQLKKLMWSHAEGKSFSCNLTDYQEANLGFQSMIHEKPDICDYGGPSRDLNFQGGKPNSCGSCEYEVSTVKSLTRHVKSHSGEKVFACSDCDYKVGSTRDLKIHMRTHTGERPYACNICDYKSRTSSGLNRHLKTHSVEKHYSCSLCDYRCRAQSALRKHTVRVHNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -