Aluc019307.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019170.2:25150176-25152989[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 1.5 1.3e+02 3.5 0.9 11 23 21 33 17 33 0.87 2 32 0.00029 0.024 15.2 2.2 1 23 39 61 39 61 0.98 3 32 3.6e-05 0.003 18.0 2.1 1 23 67 89 67 89 0.98 4 32 0.00029 0.024 15.2 2.2 1 23 95 117 95 117 0.98 5 32 3.6e-05 0.003 18.0 2.1 1 23 123 145 123 145 0.98 6 32 0.00029 0.024 15.2 2.2 1 23 151 173 151 173 0.98 7 32 0.00029 0.024 15.2 2.2 1 23 179 201 179 201 0.98 8 32 3.6e-05 0.003 18.0 2.1 1 23 207 229 207 229 0.98 9 32 0.00029 0.024 15.2 2.2 1 23 235 257 235 257 0.98 10 32 0.00029 0.024 15.2 2.2 1 23 263 285 263 285 0.98 11 32 0.00057 0.047 14.3 2.6 1 23 291 313 291 313 0.98 12 32 0.00029 0.024 15.2 2.2 1 23 319 341 319 341 0.98 13 32 1.9e-05 0.0016 18.9 1.6 1 23 347 369 347 369 0.98 14 32 0.00029 0.024 15.2 2.2 1 23 375 397 375 397 0.98 15 32 3.6e-05 0.003 18.0 2.1 1 23 403 425 403 425 0.98 16 32 0.00029 0.024 15.2 2.2 1 23 431 453 431 453 0.98 17 32 0.00029 0.024 15.2 2.2 1 23 459 481 459 481 0.98 18 32 3.6e-05 0.003 18.0 2.1 1 23 487 509 487 509 0.98 19 32 0.00029 0.024 15.2 2.2 1 23 515 537 515 537 0.98 20 32 0.00029 0.024 15.2 2.2 1 23 543 565 543 565 0.98 21 32 3.6e-05 0.003 18.0 2.1 1 23 571 593 571 593 0.98 22 32 0.0002 0.016 15.7 3.0 1 23 599 621 599 621 0.98 23 32 1.9e-05 0.0016 18.9 1.6 1 23 627 649 627 649 0.98 24 32 9.2e-06 0.00076 19.9 1.8 1 23 655 677 655 677 0.99 25 32 3.6e-05 0.003 18.0 2.1 1 23 683 705 683 705 0.98 26 32 3.6e-05 0.003 18.0 2.1 1 23 711 733 711 733 0.98 27 32 0.0002 0.016 15.7 3.0 1 23 739 761 739 761 0.98 28 32 1.9e-05 0.0016 18.9 1.6 1 23 767 789 767 789 0.98 29 32 2.8e-05 0.0023 18.4 0.5 1 23 795 817 795 817 0.98 30 32 9.6e-05 0.0079 16.7 0.9 1 23 823 845 823 845 0.98 31 32 3.6e-05 0.003 18.0 2.1 1 23 851 873 851 873 0.98 32 32 1.1 88 4.0 0.2 1 18 906 923 906 923 0.91
Sequence Information
- Coding Sequence
- ATGGTCAGTTGTTCTTGCTCGGCTGTTCTTACTGCCTGTGACAAGtatgattacagagcctctcagctagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagctagggcatttgaagagtcacaagaggactcacaccagggagaaaacctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagctagggcatttgaagagtcacaagaggactcacaccagggagaaaacctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagctagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagctagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacaagaggactcacaccagggagaaaacctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagctagggcatttgaagagtcacaagaggactcacaccagggagaaaacctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtaattacagagcctctcagcaagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgtctgtgataagtgtgattacagagcctctcagctagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtaattacagagcctctcagcaagggcatttgaagagtcacaagaggactcacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtaattacagagcctctcagttaggggatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtgattacagagcctctccgttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtaattacagagcctctcagttagggcatttgaagagtcacatgaggacccacaccagggagaaaccctatgcctgtgataagtgtgatcacagagcctctcCGTTAGGGCATTCAaagagtcacatgacacacaccgggatgaaaccccatgcctgtgataagtgtgatcacagagcctctcagctagggcatttgaagaaactttgtggggacgtttttcattccttgaggaacacatcagtataa
- Protein Sequence
- MVSCSCSAVLTACDKYDYRASQLGHLKSHKRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKTYACDKCNYRASQLGHLKSHMRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKPYACDKCNYRASQLGHLKSHMRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKTYACDKCNYRASQLGHLKSHMRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKPYACDKCNYRASQLGHLKSHKRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKPYACDKCDYRASQLGHLKSHMRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKTYACDKCNYRASQLGHLKSHMRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKPYACDKCNYRASQLGHLKSHMRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKPYACDKCDYRASQLGHLKSHKRTHTREKTYACDKCNYRASQLGHLKSHMRTHTREKPYACDKCNYRASQQGHLKSHKRTHTREKPYACDKCDYRASQLGHLKSHMRTHTREKPYVCDKCDYRASQLGHLKSHMRTHTREKPYACDKCNYRASQLGHLKSHMRTHTREKPYACDKCNYRASQLGHLKSHMRTHTREKPYACDKCNYRASQQGHLKSHKRTHTREKPYACDKCDYRASQLGHLKSHMRTHTREKPYACDKCNYRASQLGDLKSHMRTHTREKPYACDKCDYRASPLGHLKSHMRTHTREKPYACDKCNYRASQLGHLKSHMRTHTREKPYACDKCDHRASPLGHSKSHMTHTGMKPHACDKCDHRASQLGHLKKLCGDVFHSLRNTSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -