Basic Information

Gene Symbol
ncor1
Assembly
GCA_009739505.2
Location
CM019167.2:9497963-9625543[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.9e-08 2.2e-05 24.6 0.0 3 43 496 536 495 538 0.97
2 2 1.9e-11 2.2e-08 34.2 0.0 3 46 828 872 827 872 0.96

Sequence Information

Coding Sequence
ATGGAGGCTGTTGTCCACCTGGATCGCTCTTCTACCATGCCCTCACAGTCCCAGATGGCATTCTCAAGACCTTCATCTCTTCATGGACGCCAAAATCAACCTCCCGCTGACTTGTGCTACAAGCCAAACAACTCTGCCCCAAGTAACCCTGGTGGGCCTCCTAGCGCGGGTCCAGGGATTATTGCTTCATCATCCGGGAGCAACACAAGGCACTCCCCGGCCACTTTTTCGGGCTCGTCTGGTTACAACCCTATGAGATATATTCATGCTGCCCCGCCATTCCCTCCAAACTCGGGTGGCGCTCCAGTGTCATTCAGAGACACCATCTACTCCTCAAGGAGTTCTAACTTAGTCACAGAACGGGGTCAACCTATGATGGAATATGGCCTTCGGAGCGACAATATGCCAACCCAGAGTAAACCTAGAATCTCCTTACTCGCCTCTCCCGAATATATGTCCTCACTATCTAATAGACGTCTCCATCCTGAGGACTCATATAGAGGTCCAATGGTCCCAACTGGACACCAGCAAATGGACGTTGGTGGAGCTTCTTCGAAGAAAATACGCTTAGCAGATGGAAAGTCGGATTTGCAGAGGACTCTACGAATTGAAACGAGGGTTCACTCAAAACAAGACGACGGCCAGCAGGCAACCGCGTACACACCCCAAGTAGAAGCAATATCTCCAACTCTTCCAACGGAAACTCTTCAAGATGAAACTTTCAAATCAACAAAAGACGAACTCCTCCATGGAATTTCCAAAGTTGATAGGGAAATTACCAAAACTGAACTTCAGATATCCACGCTCAAACGGAAACAGCAAGAGTTGGAGGAGGCAGCCAAAAAACCTGAAGTGGAAGCAGAGGAAGAAGAAATTCCCCAACCGAAACATCATAGTCCGGCTCAAAAAATTTATGCTGAAAACAGAAGAAAAGCCCAAGAAGCCCACGGCCTTCTCAAGCACCTGGGACCAGCGATACAGTTGCCTCTCTACAACCAACCTTCGGATACTGCTGTTTACCATGAGAATAAGATGAAGCATCAGCTATTCAAGGATAGATTGATGTTGCATCTTCGGAAGAAACACATTGAGCGCGAAGCAAGAGAAAAACGGCTCACTTCCACCTACTCAGTCCTTGTTCAGGAATGGTTGCGGAAAGTAGATAAGgtgGAGAATTCTCAGAAGAGGAAAGCTCGAGATAGCAAGAATCGAGagtttttcgagaaagtttttcCCAGGTTGAGGAAAATGCGGGAAGACCGTGAAAGATTTAATAGAGTTGGAGCTAGGGTTAAAAGTGAAGCAGATCTAGAAGAAATCATGGACGGACTTCAGGAGCAAGAGATGGAGGACAAGAAAATGAGATCTTACGCTGTTGTTCCTCCTCTTCTGCTTGACGCCAAGCAGAGAAGTATATTCTATGTAAACAACAATGGCAGAGTTGACGACTTCCCAGCCGAATATAAAGGGCGACACCTGTTGAACGTTTGGACCCAAGCGGAAAAggacattttcaaagaaaagttTCTGCAACACCCCAAAAACTTTGGTGTTATAGCATCCTACCTGGAAAAGAAGAGTGTTAGTGATTGCGTTCAGTACTATTACCTCAGCAAGAAGACTGAAAACTACAAGCGTCTCCTGCGCAAATCTAGAGTGAGGTCCAGGTCAGGTCGTAACCCTCAAGCTAAGGTGGCTTCGGTGTCTGCGAATAATGCAGATTTACTGAGCACAGCTACCGGTGTCACCACTCGGTTCCAGCGAGAACAGTTGCAGAAACAGGAGCCCATCCCATCGACGAGTACTGCTGAGAGCAGGCCGCCTCTGTTGAGTGAAGGGGAGAGCCAACCTAATAATCAGCAGAGTTTCTTATCGGAAAGTCCTCCTCTGCAGCCTCCAACTCTGATGTTGCAACAGCAACAGCACAGTGAAAAACCAGAAGAAAAACCCGAGGAAGAAGAACCTACCATAGAAGTAAAGAAGAAAGCGGCAGATCCTGAAACTTCCGATGATGACCAGTACGAAAGGCCATGTGATGATGGTGCTGAGCATCAAAGTTCGCATCTTGAACGCGTTGAATGCATCGTGTGCAAGACTGCTTCAAGCATCTCGAGGGCTTTGCCCAAGAGCCAGGCCAGCCAGTACGGTCTGAAGGAAGAAGACGTCCCGTCTGACGCCCGAGTGTGCAATCTGTGCCGCTGCAAAGCCCTGCGCTCTCGGTTTACTAACTGCCCTGTCTCGTCATGTCCAAATGCCAAGATGCAGCGGGTCAAACGCCTGAGGTCTCTTCCTATCAAGTGGGTCGATCTGATCCCATCAGTGCGGGAGCAGCTGCAAGCTGAATTTGGTATGGATGAAACCTTGACAAAGTGCTGCTCGCTGTGCTACAACCGCATAGTTCGTAAAATCAGCGCCAGCATGGACGTCAGTTCGTTCATGACAAGCAAAGGAAAAATGAATCAGGCTCGGTGCTCCATTTTGAACTGGAGCGACGAGGAGATTCAAAGGCTGAAGGACGGCTTGAAACACAATGGCATCAACTGGTCTCAGGTCGCTGACGTCGTGGGGGGCGTGAAGACGCCTCAACAATGTATGACCTTCTTCTACAAGTACATGAAGAAGTTGAACCTCGAACATCATCTTCCTCCTGATGTAAAAGAAGCTGTTTTGGAAGAGAGGAAGCCTGCGTTGACTGATGAGGAGGAATCTGGCTCGAGTACTTCTAGTTGTGATGAAATCGAAGGGAGGGTAGACGGTGGAGCTGACAGCGATACAGCCAGTGCTCCTTCGCCGCTTCAAAATAGTGGTTCCTTGGAGGAAGAAAGCAAGGAAAATTCAATAACCACTCCTCCTCCCCAACTCATAGAAGAAGGTCGGATCACAATCCCCAATCCTGACACGCCAGAGAGGGGAGGATCGGCTTCGTCTCCTCAGAGCAAAGGATCCACGTCTGGTTCGAATTCTCTCCTTCCTCCAGTCTTGCTGCCCAACAAAGAAGATTACGACAGCTCAGCCACGGAGACTGCAGACGAGGGTCAAGGTGGCGGTGACACGGAGTCAGGACTAAACCAGGCTCCCACACCGAAGAGAGATGAAGAACCGTCGTCTCCGTTGACCGTCAAGGATTTGATGCTTAACGTTATTGAAATGCAGCTGATGAAAAATCCTCAAGGGAATAACTCGACCAATCCTGGCGGTCCACCTACTAtctcatcaattttgaagtcTGACAATAGTATCTCATACAACCAGCGAGAAAGGAATACCAGTCGTCCTAACCCTGATAATAGTTCACTGGCTACCGTCTCTGTAGTCAACACTCAGCACTCACATCAACCTCCAGTCCAAGACTTGAGGAAAGAAGGCTTGGTTGTTGTTCAGGTTCCTCAGAATCTGAGGGAAGCCAGGGAACCAGAAGGTGTTACTCTCGATTTGAGTATCAAAAGACCGAGAGAAGCTCATCCTCAGATGAATAAACCCGTCTCCCATCATCTTTCCCCTCAGCCGTCTTCACACGGTGTTTACAGGGTATCTCATCAGAGCCAACAGCAGCCATTGGCCCAAATGCAGCAGGTGCAGCAACAATCTCATCAGAGTCACAGCCAGCCTCAGCAGCACCACACTCAACAACCCAGTGGCGACTCTTCAGGTTTCTTCCATCAGCAAATTCTCCCTCCACCGCTGGCTCCAAAACTCTCGCCTGGCGTTATAACTGGTGCTCCCCCTAACAAACCACAGTGTGGCTCGATAATACACGGTACTCCGGTATCCAGTCCTAACCTGTATAACCAGGGGCGTTATGAGCAGCAGGGTTCAACTCCGATTATTCTCCACACATCTCCTCACAAGGAGCCTGGATCTATTACGCAAGGTACACCAGTCCATCAACGAAGTTCCCTCTTCCCGTCTAATCCATCAGATGCTCTTTTCAACAAGAGGATGGCTCCGCAAGGATTCTACCCACCTcgagttcctgcgttcaacgtTGAACAACGTCAAATCATTATGAATGATTACATTACTTCAAGGGAGATGCCAGCTCCGACGTCGTCCAGTTCTCGTAATGGACGGGAAAAGATGTACTATCCATCCGGTGCTAGACAGGGTGTGATTCAAAGGCACAACACCAAGCCACCCAGCCCTGGGGTCAGCCATCACCCTCCTGGATACGAAGCATTTTCATCGTTGGTCGATGTGGCTTCCAGACAGCCGAGCCTTCCTGTGCCGTCGCCGATGACCATGTCAATGCCCGAAGTGAAAAATATGCCTGAAGATAAGCGTCATTTGCATGGTGAAGGGCTCGGAGAACGATTCAACAGGGACAGTCCTCATGATAGATTTCCAAGCCGTGAATCAGAAATGCGCTACATGAAGGAGAGCAGTAAAGTGCATAGCCAGCCCTCTGATAGACGAGAGCATCAACAGCAGTCGTCAGCCATGCTGCAACTCCGTGAGCAGATTCCACACGGTAGAGAAACCTACCAATCACACCACATGGAGAGGGAAATGCAAGCGCACCAAATGAACATTAGGGAGCAACAACAGAGGGACCGAGAGCACCACAATCATCAGGCTCATAAGGCGATGAGAGAACACCAGATTCACGTTCAGCAACAGCAACATCAACAGCAGCAGCATCAACAACAACAGCAACAGCAACATCAACAGCAGCAACATCAGCagcagcaacaacaacaacgtgaTCTCGAGTTGCGCGGAGTACCGCGAGCCATCCAAAATTACCCTCAACGGATTATTCACAACGACCCTCACATGGGTATGGACCAGAGGCTCATTCAAGTTCAGATTTACAGAGAGCAGCCGTCTTCATCTCAGTCGTCATCCGCCAGTTCATCAGCTCACGCTGTGTCAAGAGCACTCAAACAACAGGAACAACAAAGCGTGGAGAGCCAAAACGTTCGTGGCAGACCGAGCGAAGCTTCAACTCTGACAGCTGCCAGTCTGATAGATGCCATAATAACTCATCAGATAAACCAAAGTTCTGAAGGACAGTCATCATCCCTCCCCTCTGGAGCTGGAGGTGGCCCTCAAACACAACACACAAGACCAGGAGATCGACTTTTCCAGAGTTTTCACCGGGAGTGCTCTGAATCCAATGGGAAGGTTTCTCCAATGAAAAGCAACTTATCGGTTGAAAATAAAGGTCAACACTCGTCGCAGCCACCAGTTCATGGCAGCGAGCACATGGAGGTGTATGGCAGTCAACCGCAAGGCCTGAGAAGTTCAATATACCAAGGCTACGAACCGCAAACGTGGAAGCTGAGGAGGGCGCTCCAGTCAAAAGACGTGGAAACGCCGATGCATGAAAAACCCGAAGAGCACGTGAACCGGGGCTACTACGCGGACCCTCCAGTCCCCCTTTCCCCTCTGGATTACGTGAAGAATCGGATAGCCGAAGTGATGAGGACGTCGGAAGAGGACGGAGCTGGAAAAGGAAACGACAGTCCGATATCTCCGGACGTCAATGACGACATGGAGTCCTCACCTGTCGTGTCCTCGTCTCCTTACATTTCTCAGAACCCCCATGCTTACACGTACCCCTACAGCGCTCTAAGTCTCACCACCGGCAGCGGTGCTGGTGTCTCCATGGCACCACAAACGGTCAATAAGCCTGGAAATGATCCCATTCCCGAACCAGCACCGTTATTGTCCGCTCAGTACGAGCCTCTTTCTGACGAAgattaa
Protein Sequence
MEAVVHLDRSSTMPSQSQMAFSRPSSLHGRQNQPPADLCYKPNNSAPSNPGGPPSAGPGIIASSSGSNTRHSPATFSGSSGYNPMRYIHAAPPFPPNSGGAPVSFRDTIYSSRSSNLVTERGQPMMEYGLRSDNMPTQSKPRISLLASPEYMSSLSNRRLHPEDSYRGPMVPTGHQQMDVGGASSKKIRLADGKSDLQRTLRIETRVHSKQDDGQQATAYTPQVEAISPTLPTETLQDETFKSTKDELLHGISKVDREITKTELQISTLKRKQQELEEAAKKPEVEAEEEEIPQPKHHSPAQKIYAENRRKAQEAHGLLKHLGPAIQLPLYNQPSDTAVYHENKMKHQLFKDRLMLHLRKKHIEREAREKRLTSTYSVLVQEWLRKVDKVENSQKRKARDSKNREFFEKVFPRLRKMREDRERFNRVGARVKSEADLEEIMDGLQEQEMEDKKMRSYAVVPPLLLDAKQRSIFYVNNNGRVDDFPAEYKGRHLLNVWTQAEKDIFKEKFLQHPKNFGVIASYLEKKSVSDCVQYYYLSKKTENYKRLLRKSRVRSRSGRNPQAKVASVSANNADLLSTATGVTTRFQREQLQKQEPIPSTSTAESRPPLLSEGESQPNNQQSFLSESPPLQPPTLMLQQQQHSEKPEEKPEEEEPTIEVKKKAADPETSDDDQYERPCDDGAEHQSSHLERVECIVCKTASSISRALPKSQASQYGLKEEDVPSDARVCNLCRCKALRSRFTNCPVSSCPNAKMQRVKRLRSLPIKWVDLIPSVREQLQAEFGMDETLTKCCSLCYNRIVRKISASMDVSSFMTSKGKMNQARCSILNWSDEEIQRLKDGLKHNGINWSQVADVVGGVKTPQQCMTFFYKYMKKLNLEHHLPPDVKEAVLEERKPALTDEEESGSSTSSCDEIEGRVDGGADSDTASAPSPLQNSGSLEEESKENSITTPPPQLIEEGRITIPNPDTPERGGSASSPQSKGSTSGSNSLLPPVLLPNKEDYDSSATETADEGQGGGDTESGLNQAPTPKRDEEPSSPLTVKDLMLNVIEMQLMKNPQGNNSTNPGGPPTISSILKSDNSISYNQRERNTSRPNPDNSSLATVSVVNTQHSHQPPVQDLRKEGLVVVQVPQNLREAREPEGVTLDLSIKRPREAHPQMNKPVSHHLSPQPSSHGVYRVSHQSQQQPLAQMQQVQQQSHQSHSQPQQHHTQQPSGDSSGFFHQQILPPPLAPKLSPGVITGAPPNKPQCGSIIHGTPVSSPNLYNQGRYEQQGSTPIILHTSPHKEPGSITQGTPVHQRSSLFPSNPSDALFNKRMAPQGFYPPRVPAFNVEQRQIIMNDYITSREMPAPTSSSSRNGREKMYYPSGARQGVIQRHNTKPPSPGVSHHPPGYEAFSSLVDVASRQPSLPVPSPMTMSMPEVKNMPEDKRHLHGEGLGERFNRDSPHDRFPSRESEMRYMKESSKVHSQPSDRREHQQQSSAMLQLREQIPHGRETYQSHHMEREMQAHQMNIREQQQRDREHHNHQAHKAMREHQIHVQQQQHQQQQHQQQQQQQHQQQQHQQQQQQQRDLELRGVPRAIQNYPQRIIHNDPHMGMDQRLIQVQIYREQPSSSQSSSASSSAHAVSRALKQQEQQSVESQNVRGRPSEASTLTAASLIDAIITHQINQSSEGQSSSLPSGAGGGPQTQHTRPGDRLFQSFHRECSESNGKVSPMKSNLSVENKGQHSSQPPVHGSEHMEVYGSQPQGLRSSIYQGYEPQTWKLRRALQSKDVETPMHEKPEEHVNRGYYADPPVPLSPLDYVKNRIAEVMRTSEEDGAGKGNDSPISPDVNDDMESSPVVSSSPYISQNPHAYTYPYSALSLTTGSGAGVSMAPQTVNKPGNDPIPEPAPLLSAQYEPLSDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-