Aluc015393.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019176.2:45119569-45127528[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-07 0.00014 21.7 0.0 2 38 23 60 22 66 0.78
Sequence Information
- Coding Sequence
- ATGAGTGCTATGCTCTATTGGTTGGagatgtcaaaaaaattgactgtGAAACGTTTTTGCTATTCTGAAGCAGATTTGGTTCATGCAGTCAGAGAAGTTAAAGATAGCAACATCTCACTGAATGAAGCTCATCGTAGGTATGGCGTGCCAAAAGGAACCTTgtccaacaaaataaataataaggTCCCAATGGCAAGGAAAATGGGTCCGGCCACAATACTTACACAGCAGGAAGAAGACCAAATCGAGGAGTGGATCGTGAAGAAAGCTATGCTTGGTTTCCCTCTGCATCCTGAGGACGTTAAAGATTCGATTCAGGGTCTGTTGACAGAATCTCCAAGGGAAAATCCCTTCACCAACAACCGGCCAGGAATCAAATGGTTCAATCTATTTTTGAAACGCCACCCTGAGATTAAAAAAAGGAACACTGAGGTGATTCCCAAAGATCGAGCTGAGGTGACCAAAGAAAATCTGGAGGAATGTTTCAATGAGTTGAACAATTTCCTCATCGAACATGATTGTGTGGGCATTTTTGAAGGTAGTACGAGGGGTAGAAGAGTCCTAAACCTTGACGAGACTGGCTGCCTTACTTGTCCCAAAACAGGAAAAGTACTGGGTCCCAAACAGCTGCCAGATTTTTATGAAGTCACAACTGGGAGTGAAAAACAATCAATTACAGTGCTATGCACTTACAGCGCAGATGGCTCAGCTCTACCTCCCATGGTTGTGTATCCACATAAAAAGgaaaatgggaaaacgtTATTTCTGTGA
- Protein Sequence
- MSAMLYWLEMSKKLTVKRFCYSEADLVHAVREVKDSNISLNEAHRRYGVPKGTLSNKINNKVPMARKMGPATILTQQEEDQIEEWIVKKAMLGFPLHPEDVKDSIQGLLTESPRENPFTNNRPGIKWFNLFLKRHPEIKKRNTEVIPKDRAEVTKENLEECFNELNNFLIEHDCVGIFEGSTRGRRVLNLDETGCLTCPKTGKVLGPKQLPDFYEVTTGSEKQSITVLCTYSADGSALPPMVVYPHKKENGKTLFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -