Aluc013896.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019183.2:14458939-14465652[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3 2e+03 -1.3 0.1 1 10 8 17 8 18 0.88 2 2 2.7e-09 1.3e-06 28.2 0.0 1 33 208 240 208 250 0.93
Sequence Information
- Coding Sequence
- ATGAGTAGAAAAAGGGTTTTTACTGAAGAAGAGCTTCGTGCAGCGattgattcagaagaagaaatttcAGATTACGTCCCTTCTGACGATTCAAGTGACGAGGACTCGTTATTTGCTAGTTCCAGTGAGAGTGATGACGATTCCGACGGTCACCTCGGTGATGTTCTTCATGATGTCGTCAGCGATGCTACCGGCGATGTTGGAAACGATAATGCCGACGTCGTCAACAACACAGGTACTGTTCGTGATATCGTGATATGGAACACCGCAGATGATAAATTTGAGCCTCGACTAAAACCGACTCAGCCTCGGCAGCCTCGCGTTCAATTGACAATACCTGCTGATAGTGATGAACTAACATGCTTTTTGGCTGTTTTCCCTCCCAGTCTGTTCATGCATATAGCACATTGCACCAACAAGCGCCTTGATATTCTTAGACAAGCGAAAGAAAAAAGACACAGGGAATCTCGTAAGCCAAAAAAGCCAAAAAACCCTCCAACTGTTGTTGAAACAGAGAGAAATGAGATAATGTTGTTGGTTGGTTGCATGTTAGTTATGTCGTACAATAAGATGCCAAACAAACACGCACGCAAATTGGGAAGCCGAATGTACCGAGATTATACCGACGAAAAACTAGAAGAATGTTTGGCTGCTGTGAGGAGCAAGGAGATGACACAGAGAGAAGCCGCAGCCCATTACAAAATCGCACGCAGTACAATCATCAACAAGCTCGGTGGTGGTCCGAAGAAGGAATATGATGAGCGAGCTACCACCTCGTCGCCTAATCTACAGCCTCCTTCTCCTTTTCTGGACAGAGCTCTGGAAGTGGATGACTTCGTTCTGGTCAGGTTCTTGGCtaagaaaaaatacattttctaCGTTGGTAAAGTAATCAAGAGACACTCCTCCGACGATTATGACGTTTCTTTCTTAAGAAACAAAGGCGACTACTTTGTATTCCCTCAAACAGACGATATTTGA
- Protein Sequence
- MSRKRVFTEEELRAAIDSEEEISDYVPSDDSSDEDSLFASSSESDDDSDGHLGDVLHDVVSDATGDVGNDNADVVNNTGTVRDIVIWNTADDKFEPRLKPTQPRQPRVQLTIPADSDELTCFLAVFPPSLFMHIAHCTNKRLDILRQAKEKRHRESRKPKKPKNPPTVVETERNEIMLLVGCMLVMSYNKMPNKHARKLGSRMYRDYTDEKLEECLAAVRSKEMTQREAAAHYKIARSTIINKLGGGPKKEYDERATTSSPNLQPPSPFLDRALEVDDFVLVRFLAKKKYIFYVGKVIKRHSSDDYDVSFLRNKGDYFVFPQTDDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -