Aluc000399.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- Pino
- Assembly
- GCA_009739505.2
- Location
- CM019181.2:67776665-67803762[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-09 9.8e-07 28.5 0.1 2 43 13 53 12 54 0.93 2 2 2.1 9.7e+02 -0.3 0.0 11 24 235 248 234 249 0.86
Sequence Information
- Coding Sequence
- ATGCCGCCTGTGAAAGGAAAGATGTGGAGTTATTCCCAGGAAGCACTTCGAGCAGCAGTAGCTGCTGTGTCCGGTGGAGTCCCAGTTTCTACTGCTGCAAAACGCCATGGTGTCCCTCGGGTAACTCTTCTGTACAAAGTAAGAGGCAAAACTCCATTGCGCTCCGCTCCCACCGGCGCTCCGTCGCTCCCTATAAAACCTTTGCGAGCCCGCACCGTCCAGTTTACTTGTTCCCCGTTCAGAGCCGAAGAGAGAGAGAACCGCTACCGTTCTTCTTTGTCGGTTATTGACCCTCTTCTTGAACTCCCCGTCGTGAAGTTACAGACGAGTCATAGCAGTCGCTCGAAATCTGTTTTGACGTCCGTTAGTCCGCGAGCTGTGATTAGTGATTGTCAAGTGATTTGGGAACTTATTCTCTTCCTTCAAAACACAACAAAAGgcAAGATGTCCGTCGCCAGCGTTCACCCCGCCAGCGGTCTCAGCAACAGGAGTCAGTCTTTCTCTTCCTTCAGCTCCACCGAagagctttcctcctacctgAGCACGGAGCCTGTCCTGTCCATCGAGGAACTCCGTCTTCAACTCAACTCCTGCTTTACATGCGGCGTCTCGTGGACGGAAGACCACGTCTCCCTGGACTGCGCCGAGTGCGGCGGCTACTCCCTGGCGCGCCCCTGCCCGACCTGCGAGGGTCACTGCTCCGCCGTCTGGAAGCGAGACCTCACCATGAGCCACGCCTGCGGCAAAGCCCGCTGGACCGGCAGCTGCGGCCTCCTCGCGCCCATCCAGGACGACGTCTTCTCCAGCCGCATCGCCGCCGCCCCCTCGTCTTAA
- Protein Sequence
- MPPVKGKMWSYSQEALRAAVAAVSGGVPVSTAAKRHGVPRVTLLYKVRGKTPLRSAPTGAPSLPIKPLRARTVQFTCSPFRAEERENRYRSSLSVIDPLLELPVVKLQTSHSSRSKSVLTSVSPRAVISDCQVIWELILFLQNTTKGKMSVASVHPASGLSNRSQSFSSFSSTEELSSYLSTEPVLSIEELRLQLNSCFTCGVSWTEDHVSLDCAECGGYSLARPCPTCEGHCSAVWKRDLTMSHACGKARWTGSCGLLAPIQDDVFSSRIAAAPSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -