Aluc004955.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019172.2:2844258-2845163[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-10 2.8e-07 30.3 0.0 2 40 10 47 9 53 0.87 2 2 7.7 3.6e+03 -2.1 0.1 17 22 74 79 67 80 0.76
Sequence Information
- Coding Sequence
- ATGTCACCAAATTTCAGAATTTATACAGCCGAGCAACTAACGGCAGCCCTCGCCGATGTATCAAGTGGCACGTCTATTCTAAGTGCTGCGAAACATCACAAAATACCATTTACTTCTCTTTACTTCAGAGTTAAAGGAAAACGGAAAGTAGAGTTGAGCAAAATGGGTCCAACTACACAACTAACAAcggaagaagaggaaatggtTGTTACTTGGGTCATGTCGATGGCCAAAGCCGGGTTCCCAGTAACCAGGAAGGAACTCGTTGATAGTGTCGAGACCTTGGTTGAAAAACTTGGAAGAGGCACTAAATTTAAGAATAATAGGCCAGGGCATAAAtggttcaattcaattcaattcagtTCAATTCAACCTAATGTAAATTCTGAAAACGGAATGTTGTCCAACGACATGATTATTGAAAGCATATTTGATTTGGAAGGTCTGGATATAACACACAAAGATTATGCTGAAAGAGATAGAGAAGATCGTGATGAAGTAGGAAAGACTAGAGAAACGGAGAGTGAGGATTATGCTGAAAGTGATGGAGAAGATCGTGATGAAGAAGGAAAGACTAGAGAAAAGGAGAGTGAAGATAATATTATTGATGGTGAAGACAGTGGAAAAAAGAACTTAAAAGGCAGTTTTGTATTGGCAACGTTTCAGAAACCTCGCGGAAGTTTCAATATGGTTTGTGAAGTGGTTTCACAAGACAACACATTCGCATCAGTATTCACTTACGGTCAGGTTACCAGAAATGTCATCAATAGATTCGCCCGAACTTCAAGAGAGACCACAGCAATAAGATTGGACCAAATACTAGAGATTCTTCCATCCCCAACAAAATTTGGATTTggaaataacataaaatatgaaTTTCCCGTACCACCATTAAGACTCATGTGA
- Protein Sequence
- MSPNFRIYTAEQLTAALADVSSGTSILSAAKHHKIPFTSLYFRVKGKRKVELSKMGPTTQLTTEEEEMVVTWVMSMAKAGFPVTRKELVDSVETLVEKLGRGTKFKNNRPGHKWFNSIQFSSIQPNVNSENGMLSNDMIIESIFDLEGLDITHKDYAERDREDRDEVGKTRETESEDYAESDGEDRDEEGKTREKESEDNIIDGEDSGKKNLKGSFVLATFQKPRGSFNMVCEVVSQDNTFASVFTYGQVTRNVINRFARTSRETTAIRLDQILEILPSPTKFGFGNNIKYEFPVPPLRLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -