Aluc013084.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019180.2:53460322-53477140[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-05 0.012 15.5 0.0 2 39 19 55 18 59 0.92 2 2 1.2e-06 0.00054 19.7 0.0 1 39 755 794 755 796 0.92
Sequence Information
- Coding Sequence
- ATGGGGAGAGTATACCAGCGCAAGGCAGGTGCTCGGCCGTACCGAAACTATGCGGAGGACAGTCTGGAGAAGGCGATCGAGCAGGTGGCCAATGGGAAGACCTTCCGCGACGTCTCGGCCCAGTATGGAATACCGATCGCCACCCTCTCTCGCAAATTCAGAGGCCTCCATAGCAAAGCAGTTGGGAGGCCAACTGCTCTCAGTAACATTGAAGAAAGAAATTTCGTCACGGCGCTCTCAGTTATGGCTGAATGGGGCTTCCTACTAACTGCTTGGCAGGTAAAAGTTGTTATATTATATCAAGACAAGATGCAAAGTGGAAGCGAATATTCCCCAAGCTCAAGCAGAGAAGAAGACTCGGAAGACTTCAGTGACTCAAGGGATATTTTAACATTGGAAGAACTTCTAGAAGCTGCAGAAAAGTCGGGAAATTGGACACATCGATGTCGCGCCAACAAAGAGTCAACAGCTGCCCTCAAAAACCTTGAATCGCCTAGTTACTCAGAACCCAAAGATGACCTGAAAAATGCTGCTGATGCTGCTGCGCTGACTTGCGTTGACACCACAGAAGTAACAGAGTTGACTGAAGTTGTTGTCGAACAATGTGATACTGATGATCTGATTGACCTCTCGAATGATGGTTTTGTTTTGATTGACGGAGATGCCCCAGAGTTGAATGACGTGTCCTTAAACACAAACTTCAATCTCGAGGTACTTCCATCTGAAAGCACAATTGAACAAAGCAATCTTCAAGTTGAGGACTCCCGATTCCCTTTCTGGGACAGCCAATCCCCCATTGTCAGTGATCAAGCAAGTTTTCCACCAGATCCTGTGGGGATTGACTCAGACCTCCCTCTTCAGGAATGTGGACCCTTCAATGTCATTGTGCAGGCGAATATTGGAGTTGAACCTTGTGGTAATAACACCATCGACTCCCCTCTTCAAGAAATGCTTTCCCCCATCCATGAAGTGCAAGTAAACCCTGTGGAGAATCAGCCTGGTTCTGAAGAAGAAAccacagaaatgaaaaaaaaaacaaaccagAAGCTGTCAAACAAATTGAAAAGAATGCATGGTCAAGCTTACATTGGATATTGCAGAGAGTATTTGAACAAAGACGGTCCCGCAGAAACAACTGAGCAACAGAGCactaaaaaaaataacaggCCATTCAAGATGAAGTATCCTGTTTGTAAAAACATGTTCCTTTCCACTCTGGGGTGTAAGGAACAAGAAGTTCGTTACTGGCTGACCCCCAAAAACCCAAACACCAACAACGAGGCAGTCGAGGATTGTCCAGCTTCAGAGCAGGATGGAGAAGACAACTCCGACATGTCTGTGGATCTGAAAAATAGCCAAAATATGCAAGTCATGGTTGTCAGTGGCCACAGATCACAGAAAATATTCATATCTTCACCCCGCGAAAAGACCAGTGCATACAACGAAAATAATAACCTATCAGAAGAGCAATATTTAGCTCACATCAAGAGAAAAGAAGATGCTCAAAACGAGAAGAAATTGGACAAAGAAAGAGCTGTAGCTGGAGAAGTTCATGCGATAGTATGTGATCTGATGAAGGTGGAATGTCTACCCCCGAAGCGGCAGAGATCAGCAAATTTTTCAGAGGCTGATTCTAAGCTATTGGTTAAACTGGCGAACCAGTTCAAGCATATccaggaaaataaaaaaacggacGCGCAAACCAACAAATCAAAAGCAAAGTGCTGGGTTGAGCTAGCAAATTTGTACAACGCCAACACAGCAGGCcctGAACGGGAAGCAAAAGTACTGAGGCTGAAGTACGAGTGCATTAAAAAGGCGATTCGTCGCACCACCTGTGGTACGGGTGTTTGGAAGAAGACGGGAGGTGGACCACAAGACGAGGTGTTGTCTCCTCTGAATGAGGAGGAAAAAGAACTAAGAGAGTCAATAATCCTGTCGTGCGATGGACTGCAGGCAGTGGAAGGGTGTGATTCAGATTTTGTGGAAGATATGAAGGTGAAACAGTATTGGACTCTCAATGAGCTTCAAGATGCCATGCAGGACCCCGATTTTCTGAATCAATTTGAAGACGAAGGCGGAATAGATGAAGAAGCGGATCACATTGACATCGTACAGCTGCCACCACAAACTGTTGACGTAGTTTCAGACAACGAGGAGGTCGACGAGGATGATTTGCTCGATGATTCTCCACCAAAGGACGTCCCAGGAATGGGGAGACACTACCAAAGGGTTCCCGGATCCCGTAAATATCGCGATTATACTCCCGAAATCTTGCGTGCCTGCCTTGAAGCCATTGGAAACGGTGACGTAACATTGCGAGAGGCTGAAATTGTTTTCGGTATTCCAAAACGGACCATCTGCTACAAACTGAAAAAACAGCATTGTTTGAAGCCTGGTCGACCTACAGTTTTTTCCAAAGAAGAAGAGTTGGCAGTGGTAGAATGCATCATTCGCCTGGCTGTCAAAAAGAGCGAGAAGGAATCCTATAAGCTAAACTTTCCAGATGAGCTTCGGCAGCTACCATACCGGGCGAAACCCATCTTCAGAGCCATATCAAGCTTCCCTCAACTCATCAAAACTCGGCCTAAAATTGCAAGGGACAAATTTGAAGATCTCCAGTGGTTGAAAAGAATGATGCCTGTTGACTGCCACCCCTTTAAACAGGAGGGAAATCAAAAGGCAGGAGAATGCAAAAAAGATGCAGCAAAAGAAAAGGATTTCCCATTGAAGACTGAAAGAGATGAAAGGCTGAAGAAAATAGACtgtaaagagaagaaaaaaaaccccggATACACTAAGAACATTAAGCAGAAAGTATTATTCCATTAA
- Protein Sequence
- MGRVYQRKAGARPYRNYAEDSLEKAIEQVANGKTFRDVSAQYGIPIATLSRKFRGLHSKAVGRPTALSNIEERNFVTALSVMAEWGFLLTAWQVKVVILYQDKMQSGSEYSPSSSREEDSEDFSDSRDILTLEELLEAAEKSGNWTHRCRANKESTAALKNLESPSYSEPKDDLKNAADAAALTCVDTTEVTELTEVVVEQCDTDDLIDLSNDGFVLIDGDAPELNDVSLNTNFNLEVLPSESTIEQSNLQVEDSRFPFWDSQSPIVSDQASFPPDPVGIDSDLPLQECGPFNVIVQANIGVEPCGNNTIDSPLQEMLSPIHEVQVNPVENQPGSEEETTEMKKKTNQKLSNKLKRMHGQAYIGYCREYLNKDGPAETTEQQSTKKNNRPFKMKYPVCKNMFLSTLGCKEQEVRYWLTPKNPNTNNEAVEDCPASEQDGEDNSDMSVDLKNSQNMQVMVVSGHRSQKIFISSPREKTSAYNENNNLSEEQYLAHIKRKEDAQNEKKLDKERAVAGEVHAIVCDLMKVECLPPKRQRSANFSEADSKLLVKLANQFKHIQENKKTDAQTNKSKAKCWVELANLYNANTAGPEREAKVLRLKYECIKKAIRRTTCGTGVWKKTGGGPQDEVLSPLNEEEKELRESIILSCDGLQAVEGCDSDFVEDMKVKQYWTLNELQDAMQDPDFLNQFEDEGGIDEEADHIDIVQLPPQTVDVVSDNEEVDEDDLLDDSPPKDVPGMGRHYQRVPGSRKYRDYTPEILRACLEAIGNGDVTLREAEIVFGIPKRTICYKLKKQHCLKPGRPTVFSKEEELAVVECIIRLAVKKSEKESYKLNFPDELRQLPYRAKPIFRAISSFPQLIKTRPKIARDKFEDLQWLKRMMPVDCHPFKQEGNQKAGECKKDAAKEKDFPLKTERDERLKKIDCKEKKKNPGYTKNIKQKVLFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -