Aluc001133.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019181.2:44816788-44835196[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-06 0.0023 17.7 0.0 9 33 319 343 316 351 0.89 2 2 5.9e-10 2.7e-07 30.3 0.0 1 42 417 458 417 461 0.92
Sequence Information
- Coding Sequence
- atgagcttgggcgttttggaGGCGGTCCGGAATTTGTTTGGCGGAGATTTGGCTAACGTGCCGGTAATCATGTCCTATACCAACTGGGACTCACGCCATCGCAGACTACAGATGCACGATTGGGCGAAGTTGGATGATCTTGTTGACTGGTTGAGGCAAGTTAGGTACATGGGTTTCCATGTGAGAGTCAACCGGGACCGCATTAAACAGCTGTACGCGGTGATCATCGTGCGCGCTCCGTTTTCCGCGACGCAGCGTTTTCCGGAGGGTGTGCTGTATGTAGATGTCGATAACGTGCACGTGAGGACTCTGATTGATCAGATTGTCCTCTCGCTCGATATGCCGGATCGGCAAATCGAGAAGGGCGGAATGGCGTATGATTCGTCTGATGCCAAGCGTGCATTCGACGTCGGCGTGCAGTCCCTGATGGCGGCGATGCTGAGCGAGGAGGATGCTGCGGGAGTAACTGATCTTCTTGATCCATCAGTTGCTGGCAAAGTACTCAGTGCTGGGAGATGTTTTGTTGAATTGAGTATGCCTGAAAAGGGTTTGATCTGTCATTACGGAATAAACTTTACCGCTTGCAATACCGATCCCCATCGCATAAAGAAAGAGACACTGGATAGAATATTAAATATCTATTATTCAGACAGCATCAATTTGATCCCTCATCAGAGGTTCCCTCGAGATACTGAagaggaaaaatgcaaactcaGAGATAGTGAGGGCCTCATACCCTTTGTAGGAAAAGCGTACAAGTGGTTATTCGGCATTGGAACTGATGCGGACTATAAAACTATTAGGCGTGCAGCTTGTCGTAACACAATATCTGTTGTGCAAGCAGGAAGTGGAACTTCTACAGCATCAATATCGGCCACTGACGAAGCTGTCCTGAAAGTGATTACTGTATCTGCGACGGGACTGAGCAATGACTACGATTGTGGCGCAGAATGTTTGGCTGTTGTGAGGAGCAAGGAGATGACACAGAGAGAAGCCGCAGCCCATTACAAAATCGCACGCAGTACAATCATCAACAAGCTCGGTGGTAAGCACTCAAGACCAGTTGGGAAACCATCCATCTTCACCCAAGGCGAAGAGAATGAATTCGTCTACTGCCTGATAAAAATGTCAGAGTATGGTTTTCCCATGAACAAAACTGATTTGAGAATGGTTACGATTGAGGAGGAGTCCCAGTCTGAAAGCGAAGATGATCAGGAGGTGAAGAGGTACTACAAGCGATTCACCTATACTGAAGAGGATTTGGCTGTGGCCATCAGGGGAATGAAGGCAGGAACTCTCTCGATCTACAAGGCTGCCAAAATCTACGGAATCCCTAAAGGAACGTTATTCAACAAGGTGAGAGGTAAAGTACCCATGACAAGAAAGATGGGCCCTCCTACAGTGCTCTCACAGACAGAGGAAGAGAATGTAATGAACTGGATCCTCAACATGGCGAAACTCGGGTTCCCTATGCATGGAGAAGATGTAAAGGATACTATTCAAAAGACAGAAGGGGAcacgaaccggttgcaggggggTTTCCAAGGCATTGGAATTCACCCACTCAATCGGGAAGTcgtgttgaaaaaattgagtcaCCGTGTTTTTGAAGATGCACATGGTGGGGAGCACATCAAAAATGTTTCAGAAACATTCCTTGAAGAACTAAAAAAACACAGGAAAGAACTGACAGAGAAAAACCCACGCAGAATGGCTAGGAAGAAGATGAATGTTCCTCCAGGGAAGGGGATCACTGTTGAAGATTTGGATTCACCTTCAACTTCATCAGCTGCTGGGGTTCCGTCGACTAGTGGTGTTAAGCGCCAGGGAAAAGGAAGAAACGACGGTACCTCGAagaaaaggaaacagcaaaaaGAACAGGAGGAGGCGGAAATTGATTCAACTGACGAAGAACTTCTTTCTGAAGGTGACATCCCCTATGCAGAGAGTGATGATAGCCTCCCTGATATGCGCGACAACGCCCTACCAAGTAGGAACGATTCGTCAGAATGTGAAGGTGATCCTGGAGTTGGCCAGCCAACATTGAACGTCCCTGTGCTATCAGAGAGTGCAGCACTCAAAAATACGAGGCCTTAG
- Protein Sequence
- MSLGVLEAVRNLFGGDLANVPVIMSYTNWDSRHRRLQMHDWAKLDDLVDWLRQVRYMGFHVRVNRDRIKQLYAVIIVRAPFSATQRFPEGVLYVDVDNVHVRTLIDQIVLSLDMPDRQIEKGGMAYDSSDAKRAFDVGVQSLMAAMLSEEDAAGVTDLLDPSVAGKVLSAGRCFVELSMPEKGLICHYGINFTACNTDPHRIKKETLDRILNIYYSDSINLIPHQRFPRDTEEEKCKLRDSEGLIPFVGKAYKWLFGIGTDADYKTIRRAACRNTISVVQAGSGTSTASISATDEAVLKVITVSATGLSNDYDCGAECLAVVRSKEMTQREAAAHYKIARSTIINKLGGKHSRPVGKPSIFTQGEENEFVYCLIKMSEYGFPMNKTDLRMVTIEEESQSESEDDQEVKRYYKRFTYTEEDLAVAIRGMKAGTLSIYKAAKIYGIPKGTLFNKVRGKVPMTRKMGPPTVLSQTEEENVMNWILNMAKLGFPMHGEDVKDTIQKTEGDTNRLQGGFQGIGIHPLNREVVLKKLSHRVFEDAHGGEHIKNVSETFLEELKKHRKELTEKNPRRMARKKMNVPPGKGITVEDLDSPSTSSAAGVPSTSGVKRQGKGRNDGTSKKRKQQKEQEEAEIDSTDEELLSEGDIPYAESDDSLPDMRDNALPSRNDSSECEGDPGVGQPTLNVPVLSESAALKNTRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -