Amor007625.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000005.1:45897536-45915481[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.24 33 6.6 1.0 2 19 501 518 500 524 0.91 2 11 0.00032 0.044 15.6 4.7 1 23 538 561 538 561 0.97 3 11 0.075 10 8.2 0.5 1 23 566 590 566 590 0.89 4 11 0.00052 0.071 15.0 0.2 2 22 641 661 640 661 0.95 5 11 0.001 0.14 14.0 0.7 1 23 714 735 714 735 0.95 6 11 8.6e-05 0.012 17.4 1.8 1 21 741 761 741 764 0.89 7 11 0.00012 0.017 16.9 1.2 1 19 781 799 781 802 0.94 8 11 0.3 42 6.3 1.4 2 23 809 832 809 832 0.96 9 11 0.016 2.2 10.3 0.8 1 20 838 857 838 858 0.96 10 11 0.042 5.8 8.9 2.0 1 21 866 886 866 891 0.92 11 11 0.21 29 6.8 0.8 1 23 897 920 897 920 0.97
Sequence Information
- Coding Sequence
- ATGCTTTCGCCTCACGATGACGACGATGACAACCATTTGTGTATCAAATGTAACGCGACTATCATTGGACTGGATAATTACATCAAACATAGAAAGGAAAGGTGCGGCAAAGACAAATCGCAAATGAAATCAGACCTTCCTCCAATCGATACATTGGAACCCACTTACAGCCTGGGTGCAGACATATTTTTTCAATCCTTAGAACTTCAAAGCAGTGTTAAGAAATCTTCTTTGTCTAGACTAACACCACCAACACCCATCTCCAAAGCAAAAATTAGTACTAAGAGTACCATGCCAACGGCATCTACATCTAGAGATCTTCCTAGGATGAGTCCATTAGAAAATAACTTAAGAGGGGAAGACTGGATCGGTGGTCATAGTTTAAGAATTGGCAGTAATGAAGATAATCAAACGAAACTAATTAACGCAGTAGCTAGCATAAGTGGAAACGTAAAGAAAGACATCCAAACTGTATCATATAACATTGGACCATTTGCTGATTTCAAAGGTGACGATGATTCCGAGGAATCAGAAGATTCGGACGAAGATGACGAAGAAGATGCTCCTCATGGTGGTAAATGGAAACCGCCATCTAATTATACAGGTGGAAAATGGCCACCTGATTCACCAGAACATGAAGAATGGGAAGAACAAGAGCACATTGGTGGGAAATGGAAGCCACTTGCGATAACCGACGGGAACGAAAGAGATGAAGACTATGATGCTCCACCACCTGGACACACTAAAGGCAAGTGGATACCCGGAGCTAATGAAAAAACACAGATTATGCAAACTACAATCCAAACCAAAGGGTCCGTCCAATATTGGTGTGGTCCTTGCAATCGTCGTCTTGGTTCGAGAGCTATATacgataaacatttaatgtCAAATTTACATTTGCGTAAAGTACTTCCGGAGCAAGAATTAGAATATTCAGGGCATTTGGAACCAACGCGTGCCGTGATGGACAAAAGACCAACCCGACCTTCTCTATTTGTCAATGATAGTATTTATTCTGGCCCAAAGAAGAAAAATAAGCTAGTTgagtcaaaaataatttttaaaatagaaaaaaagaaaagaaaaaggaaGCCTATATTTGTGCAGTGTTCTGGATGTAAATCTCGCGTTCGAATACACTTAATGGGTAAGCACTTAATATCACATTATCATTTTAGAAAGGCTACCGATACTAAAAGTGCTGTTTATCAAGATCTTATTTTAAGTTATATGGATGCAATCGTACATCAGTCACCGTTTCAGTGTAGTCCATGCAAATTTTACACAAACTGGCTATCAAACTTCATGCAACATTGCTATTCTGAAGAACACGAACAAATTGTTACATCCATAGAAGGTAGATATTGGTGTTCATTTTGCAAATTTGAATGTGATACATCTCCTGAAATGCTAGGACATCTAACAAGCTCCGAGCATAGCGAAGTTGTCGCTGCAATAAACAGATCAATGCCAATAATTATAAGGAAAAAGTCTATTCTCCGATGCGAAGTTTGCGATGAAGAGTTTCGGTATAACATGGAGATTAAACAGCACTGCCTAAAAACTGGTCACAGATTAGCTTATACAGCAACAGATAGCTATCAAGAGCTTCACAAATGTCAACACTGtggtcaaaaatttaaatcatcCTTGACTTTGGCAGCGCACTTGAAATCTAGGCATAAGCAACAAGCTTTCTTTTGTCTTATTTGTGCAAAAACGTTTGAATCTTCTGCGGAAGCAAAGCTTCATCGACAAAAATCAGAACATAGGGTAAGACGAAAGGAAATTCTCAAAGATCGAGGAATGCCAGTGAAAGATCTAAGAAAAAAGTGTCCTTATTGTGCGGAGAAAgtcgttttaaaaaatgtacttgaaTTAAAGGATCATATTCGAAGGATGCATCCCAATATGAAAAAGAAGTGCCCAAAATGCGGTGAAACTTTCATTTTTTCCCAAGAAGTTACCCAACACATTAGATCCAACGCGTGTCAGTTCGAGAAACACGACCATCACAAGGTGTCCATTCTTTGGAACTGCAGCCAATGCCTGTACTCAACAGACTCACAAGCGGAATGTTTCTTCCACGAAGTCTTACACACAGAACCTATTAGCCAAGATAATGTGAAGAACCCGAAATATTTGTGCCCATTCTGTTCAAAACCATTCAAGAAGGCGTCACTACGAGAGCATATAAGACAGCATACTTTCGAAAGACCCTTCGTCTGTTCTATTTGTGGGGCTAACTTCACAAGACAGTCCAGCTTGACGAATCAttgcaaaaatatacatacagacaatgaGATAAAAATTCCgagtattttagaaaaaaatgaagTATATCGTTGCGACAAATGCAAGAAGAGATTTACAAACAGGTCCACACTAGACCAGCACTCGTTGGTCTGCGCCGTCGAAGAAAGGAAGTGCCCGCATGATCAGTGTAACTTCATCGCCACTTCTGCTGCTCAACTTGCCagACATCACCTATCCCACGGCGAGCGGCTGCTGCACAAGTGTCCGGCGTGTGAGTTCAGGACGGAGCAGGCGAGCCACCTGAAGCGCCACCTGGTGTGCCACGAGGGCGCCAAGCCGTACGCCTGTCCGCACTGCGCCTTCACGTGCGGGAGTTTGgAGAATCTTCGCAAGCATGTGCTCCGAAGTAACCGCCATCCTGGCCTGCATTTGTACTACTGCCGTTCCTGTTCCTATAAAACTAATTTAGCAACAGAACTTCGAGCTCACCTCACAACTGACCACGCCGAAAAGTATGACGACAGAACAGCACTCCAAGATGTTAAACAACATTTAATGATATCCAGTTAG
- Protein Sequence
- MLSPHDDDDDNHLCIKCNATIIGLDNYIKHRKERCGKDKSQMKSDLPPIDTLEPTYSLGADIFFQSLELQSSVKKSSLSRLTPPTPISKAKISTKSTMPTASTSRDLPRMSPLENNLRGEDWIGGHSLRIGSNEDNQTKLINAVASISGNVKKDIQTVSYNIGPFADFKGDDDSEESEDSDEDDEEDAPHGGKWKPPSNYTGGKWPPDSPEHEEWEEQEHIGGKWKPLAITDGNERDEDYDAPPPGHTKGKWIPGANEKTQIMQTTIQTKGSVQYWCGPCNRRLGSRAIYDKHLMSNLHLRKVLPEQELEYSGHLEPTRAVMDKRPTRPSLFVNDSIYSGPKKKNKLVESKIIFKIEKKKRKRKPIFVQCSGCKSRVRIHLMGKHLISHYHFRKATDTKSAVYQDLILSYMDAIVHQSPFQCSPCKFYTNWLSNFMQHCYSEEHEQIVTSIEGRYWCSFCKFECDTSPEMLGHLTSSEHSEVVAAINRSMPIIIRKKSILRCEVCDEEFRYNMEIKQHCLKTGHRLAYTATDSYQELHKCQHCGQKFKSSLTLAAHLKSRHKQQAFFCLICAKTFESSAEAKLHRQKSEHRVRRKEILKDRGMPVKDLRKKCPYCAEKVVLKNVLELKDHIRRMHPNMKKKCPKCGETFIFSQEVTQHIRSNACQFEKHDHHKVSILWNCSQCLYSTDSQAECFFHEVLHTEPISQDNVKNPKYLCPFCSKPFKKASLREHIRQHTFERPFVCSICGANFTRQSSLTNHCKNIHTDNEIKIPSILEKNEVYRCDKCKKRFTNRSTLDQHSLVCAVEERKCPHDQCNFIATSAAQLARHHLSHGERLLHKCPACEFRTEQASHLKRHLVCHEGAKPYACPHCAFTCGSLENLRKHVLRSNRHPGLHLYYCRSCSYKTNLATELRAHLTTDHAEKYDDRTALQDVKQHLMISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256430; iTF_00257386;
- 90% Identity
- -
- 80% Identity
- -