Amor037531.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000031.1:7172004-7206162[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.039 5.4 9.0 2.2 1 23 85 108 85 108 0.94 2 13 0.18 25 6.9 0.0 2 23 135 157 134 157 0.95 3 13 0.00054 0.074 14.9 0.3 1 23 179 201 179 201 0.98 4 13 9.8e-05 0.014 17.2 0.7 1 23 205 227 205 227 0.96 5 13 2.3 3.2e+02 3.5 0.7 1 23 232 255 232 255 0.91 6 13 0.18 25 7.0 2.5 2 23 262 284 261 284 0.92 7 13 2.7 3.7e+02 3.3 4.9 1 23 313 336 313 336 0.93 8 13 0.23 32 6.6 4.1 1 23 541 564 541 564 0.94 9 13 0.0044 0.61 12.0 0.6 1 23 569 592 569 592 0.92 10 13 1.2e-05 0.0017 20.1 1.6 2 23 599 621 598 621 0.94 11 13 4.7 6.5e+02 2.5 0.4 1 23 627 649 627 649 0.78 12 13 9.2e-05 0.013 17.3 2.7 1 23 655 677 655 677 0.97 13 13 1.7e-06 0.00023 22.8 3.1 2 23 684 705 684 706 0.96
Sequence Information
- Coding Sequence
- atgGCTTGTTTTACAGGTTCTACTCCCGGGGCCGGATCTAAGCGTCGTGTTATTTCTGTCACCATACAGAAAGGTGCCAAAGATATTGAATCGACAAAAAAGAAAGTATGTATTACATTAGGAGAAAAACCTAAACAAAAATTATGGGTGACAAGGAAAAAGAATCAAGACTTTGAAAAGCATCAAGAGAACATCAAACAAATACTCTTGAACTCGAATGCAACGCCAATTATTTGCCCCAGTGGGATTGGATACTACTGTGGTTTTTGTTCAGTTAGATGTACAGAACCAAAAGATTTGAAAAGGCATACTCTTGAACAACATGATGATAAAGCAAAACTCAACTTTATGAAGAACGTTCAAATGAGTTCATATGTTGTAAGATTAGacattacaaatttaaaatgcTCTGCATGTGGAGAAAATATTAGAGAATTAGATGACTTGGTTGCACATTTGATGGTGacacataataaaaaatttcacaCTGATATCCCAGATCATATAATTCCATATCAATTTGAAAGTTCTGAATTTAAATGTGTGTTATGTAAGAAGGAATTTGtagatttaaaagttttatctgAACATATGAATGTTCATTATGAAAATCATATTTGCGATATATGTGGTGCTGGATTTGTTAACAAAAGAACATTACAAACTCACAGAGAAAGGCACAAAATTGGTACTTATAGGTGTATAAGTTGTGAAAAGGTATTTGATACTAGACTCAAGAAATTGGAACATGAAAGAACTGTTCATGTAAAGGAAAAGAATTTGAAATGTCGTTACTGTGATGAGAAATTCATGCATTACTCAAAGAAAAAGAGTCATGAAATAGTTATTCACGGAGCGAAACCTTTCTCACATCATGCGGGCCTCAACAACGAACCTAAATACACAATGAGTAAAACCGAGGACGGTACTAAGCAATATACCTGCTATGCCTGTAAGCgagttttcaaaaaaatcaacCACGTATCTCAACATTACAGTCATGTTCATTTAAACTTACGTCCAAAAGTCAGAAGTTGCACTTTATGTGATGTAAAAGTTCCAGCACATTCTAGACCATTCCATTTAGAAGAAGCTCATGGGATTCCAGCACCAACTTGTAATGTTACACCAATGCCGGGGGATCTTTGTTCACTGACATATTCAATATGTAACTCATGTGTTGGGAAACTACGGGAAGCTAGTTCATTTAAGAAACAAGTTCAGGTTGCCGAAGAGCGGTTTATGgagttatattacaaaaatgctATCAAAGTTGCAAAGCGTGGCTCAGATAAGTTAATCAAAGAGGAACCAGAAACAATAGatTTTAAAGAAGAGTTTCTTGAACCAGGCGATGACGACGAGGATTTTAAAATACCAGACGATATGgatAACTCGTCAGAAGAAGATATGGATCTCTCAACACTAAGTGCCAAAGGAAAGGGGAAAGGGAAAAGAAAAGTAGACACTCCACCTCAGAAATTCAAAGTGAAAAGCACAAAAGTGACTATCAAGCAAGAGAAAGAAGATAAAGAGAAGAAAGTCGCAGAACAGAAGAAAGGAAATAACACGACACGAAATAGATACGGAGCGGATTCCTTTAAACGTATTGGCGACACATATCATTGCAGCCAATGTGATAAGAGATATATGAAAGCAAATACAATGAGATACCATTATAACGCCAAACACGCGAAACCTTTACACACTTGCGACATATGCGAAAAGGATTTCAGGACTGTGCCATTATTTACGGCGCATAAATTagaagaacataaaatagacgATAGAATTAAATGCAAAGCTTGTGATAGAAGTTTCTACACACAGAAACAATTGAAACGTCATATGTTGGGCTTCCATATGATGGGGACGAAATATAAATGTGACTTGTGTGATTTTGAGTCGTATGCAGTTAACGCGCAGCAAAGGCACAAGATGGTGCATGACAAAGTTAAAGATTTCCAATGTAGATTCTGCTCAAAAGCATTTGCTAGACGTAGTCATCTTAATCTTCATGAAAGTATACATACGGGTGATAAGAAAGAAAAATGCAAAGAGTGTGGAAAAGCGTTCGTTCAGAAGACTAGTCTTAATTATCACATGATGAAACATCATCCAGAAGTTCCTCATTGTCGAATTGCTGCGATTAAGTAA
- Protein Sequence
- MACFTGSTPGAGSKRRVISVTIQKGAKDIESTKKKVCITLGEKPKQKLWVTRKKNQDFEKHQENIKQILLNSNATPIICPSGIGYYCGFCSVRCTEPKDLKRHTLEQHDDKAKLNFMKNVQMSSYVVRLDITNLKCSACGENIRELDDLVAHLMVTHNKKFHTDIPDHIIPYQFESSEFKCVLCKKEFVDLKVLSEHMNVHYENHICDICGAGFVNKRTLQTHRERHKIGTYRCISCEKVFDTRLKKLEHERTVHVKEKNLKCRYCDEKFMHYSKKKSHEIVIHGAKPFSHHAGLNNEPKYTMSKTEDGTKQYTCYACKRVFKKINHVSQHYSHVHLNLRPKVRSCTLCDVKVPAHSRPFHLEEAHGIPAPTCNVTPMPGDLCSLTYSICNSCVGKLREASSFKKQVQVAEERFMELYYKNAIKVAKRGSDKLIKEEPETIDFKEEFLEPGDDDEDFKIPDDMDNSSEEDMDLSTLSAKGKGKGKRKVDTPPQKFKVKSTKVTIKQEKEDKEKKVAEQKKGNNTTRNRYGADSFKRIGDTYHCSQCDKRYMKANTMRYHYNAKHAKPLHTCDICEKDFRTVPLFTAHKLEEHKIDDRIKCKACDRSFYTQKQLKRHMLGFHMMGTKYKCDLCDFESYAVNAQQRHKMVHDKVKDFQCRFCSKAFARRSHLNLHESIHTGDKKEKCKECGKAFVQKTSLNYHMMKHHPEVPHCRIAAIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -