Basic Information

Insect: Apodemia mormo
Gene Symbol: -
Assembly: GCA_036924255.1
Location: JAUPFN010000028.1:18658904-18690955[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.7e-05 0.0037 19.0 1.8 1 23 281 303 281 303 0.99

2 10 0.0044 0.6 12.0 2.6 1 23 310 332 310 333 0.94

3 10 0.03 4.1 9.4 2.0 1 23 364 387 364 387 0.97

4 10 0.00069 0.096 14.6 0.6 1 23 391 414 391 414 0.97

5 10 0.092 13 7.9 0.3 2 21 427 446 427 451 0.93

6 10 0.091 13 7.9 0.7 2 23 504 526 503 526 0.96

7 10 0.00055 0.076 14.9 0.6 1 20 542 561 542 564 0.94

8 10 1.1e-05 0.0015 20.3 3.9 1 23 570 592 570 592 0.98

9 10 2.4e-07 3.3e-05 25.5 0.9 1 23 599 621 599 621 0.97

10 10 0.016 2.3 10.2 3.3 1 21 627 647 627 650 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.7e-05	0.0037	19.0	1.8	1	23	281	303	281	303	0.99
2	10	0.0044	0.6	12.0	2.6	1	23	310	332	310	333	0.94
3	10	0.03	4.1	9.4	2.0	1	23	364	387	364	387	0.97
4	10	0.00069	0.096	14.6	0.6	1	23	391	414	391	414	0.97
5	10	0.092	13	7.9	0.3	2	21	427	446	427	451	0.93
6	10	0.091	13	7.9	0.7	2	23	504	526	503	526	0.96
7	10	0.00055	0.076	14.9	0.6	1	20	542	561	542	564	0.94
8	10	1.1e-05	0.0015	20.3	3.9	1	23	570	592	570	592	0.98
9	10	2.4e-07	3.3e-05	25.5	0.9	1	23	599	621	599	621	0.97
10	10	0.016	2.3	10.2	3.3	1	21	627	647	627	650	0.84

Sequence Information

Coding Sequence: ATGATTTCGTTTCAGGAATCTGAAGAAGATTTAGACGCATTAGCCGAATTGAGGGTGTGTAGAGTATGTTTGTCCATAGATGTAAAAATGCACTACATAATGGATCCCAAGTTGAGGTTTATATACGAACAACTGGTGGGGGTTACtCTAAGCGCAGAGGATAGACTCCCCAAAATGCTGTGCTTTGAATGCGCCGCCCGTCTGTTGTCTGCCAAAAAGTTTAGAGACAGAGCGATCACCGCACAATATACATTGTTGACAGCATTGCCTGTTGACAAAAGTATAACATTAAAGGATATAAAGTCactaaatcataattttaattCTACCCTCAGTCAAGATTGTACCCTCATTAATGACAATGATGGTATGATAAAAATTGAAGTGAAGAAAGAAAGTAGCATCGCAAGTGATGAAGATGATATAAATGATGATGATACAGAAGTCGATGGAATGGGTGATAGTAAAGATGATGGAGAAATTGACTATCCAGAGGTATATGTGGAAATTGAAAACGATAAAAGTGACATATTTGTGGACACTTTAAGTGTTAATAGTGATGATAATAAGTGtttaagtgaaataaaaaagtgtgtGAAACGTAAGAGTTATCGAGTGAAAAAAAGTTCAAGAGCTAGGGGGTTCAAGAAGAATAGGGAAAAAATTGATGTGAAGAATCCATTGTCTACTATGGACAGGTACAAACAATCAGGTGTAAAGAGAAGGAAAAAGAAGTTAGGGGTTGATGAATCTCTATTCACCATCACCCCTATTTCGTATGAGGAGCAGATAGCGGAAATAGAGAAGAGACAGGAGAGTAATTCTTATAAGAATGCTCTCTTTAAGTGTACCATATGTTACAGAGGATTCCCAAATACCGAGAACTATAAGTCACATATGATGAGACACAGCGAGAAAAACGGGGCGTTTGAATGTTTCATATGTAAGACTAGGTTCAAAATAGCCCGCTCTTTGAGAAACCATCTCACTGCGCACCACACAGAGAAGTTTAGTTGTAAGGGGTGTGCTTTTACAACGCAAAACAGATGTACTGCCAGAAGGCACGAAGATTGGCACTCCGGAGCCAGATATCATTGTCCTCATTGTCCGAGTGTATTTGACAAAGTTACAACGTACATGGGCCACATACGAATTAAACACGCTTCAAAATTCGTCTGCGGATTGTGCGGATATACGTTCATCAGTAAAAAGGGCGTAGAAGTCCATAAGAAGAAGAAACACAAGTTTTTGGATACCGCGACGCTGCTCGAAGGACCATATTGTAAAGAGTGTGATGTGAGGTTCATGTCTGAGGAGGCTTACGACAGACATCTGAAACTATCATCCCTGCATAGCAGTGAATATGACCCCAACAGGATACGGAACGACTCTCAGAGCTCTCGAAGTAAGGAAGGGAGTCTTCATGTAATACGAAGTTTCGAAAGGCGGCCCCTCATTCATCCAAGACCGCTTGGTCCTTCGAAGCCAGAACGGGAGAAAGGGCCGATGACATGCGAAAAGTGTGGCCTCGTGCTGAACTCGCTGCACCAGTACGCGGGCCACTTCCGGCGCGTTCACCCCGGCGAGATGCGGACCGTGTTCCCGCCGGTGGGGCCCAACCCTTACATGTGCGAACATTGCGGCCGACTCTACCAGACTTACAGCCAACTTGAAGCCCACATGTGGGTCCATACTGGGGTCAAACGATACCAATGCGACCATTGTGACAAATCCTTCACCAACAAGACGAGCCTCATGTTCCACTTGAGAGTGCACAGCGACTACAAACAGACATATGACTGTAACATCTGCGGGAAGAGCTTCAGCTACCCGAGCAACCGGCAGCGACATATGTTTATACACAGCGACTTGAAGCCGTTCAGGTGTGAGGTATGTGGGAAAGCGTTCAGAACTGCCTTCGATCACAAGACGCACTTCGAGCACGTCCACAACAAGAAGCCGTGGCCGAAGAGAGTCAGGCACAAGAGACCAGCGACTACTGAAGAGACTACTGAAGTAGAAATATACAGTGGCGAAGATACCGCCGTGTGTTGA
Protein Sequence: MISFQESEEDLDALAELRVCRVCLSIDVKMHYIMDPKLRFIYEQLVGVTLSAEDRLPKMLCFECAARLLSAKKFRDRAITAQYTLLTALPVDKSITLKDIKSLNHNFNSTLSQDCTLINDNDGMIKIEVKKESSIASDEDDINDDDTEVDGMGDSKDDGEIDYPEVYVEIENDKSDIFVDTLSVNSDDNKCLSEIKKCVKRKSYRVKKSSRARGFKKNREKIDVKNPLSTMDRYKQSGVKRRKKKLGVDESLFTITPISYEEQIAEIEKRQESNSYKNALFKCTICYRGFPNTENYKSHMMRHSEKNGAFECFICKTRFKIARSLRNHLTAHHTEKFSCKGCAFTTQNRCTARRHEDWHSGARYHCPHCPSVFDKVTTYMGHIRIKHASKFVCGLCGYTFISKKGVEVHKKKKHKFLDTATLLEGPYCKECDVRFMSEEAYDRHLKLSSLHSSEYDPNRIRNDSQSSRSKEGSLHVIRSFERRPLIHPRPLGPSKPEREKGPMTCEKCGLVLNSLHQYAGHFRRVHPGEMRTVFPPVGPNPYMCEHCGRLYQTYSQLEAHMWVHTGVKRYQCDHCDKSFTNKTSLMFHLRVHSDYKQTYDCNICGKSFSYPSNRQRHMFIHSDLKPFRCEVCGKAFRTAFDHKTHFEHVHNKKPWPKRVRHKRPATTEETTEVEIYSGEDTAVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -