Amor016049.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000011.1:4030435-4040650[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.022 3 9.8 1.4 2 23 37 58 36 58 0.93 2 15 0.016 2.2 10.3 0.9 1 23 96 119 96 119 0.97 3 15 0.00037 0.051 15.4 4.5 1 23 121 143 121 143 0.96 4 15 0.0068 0.94 11.4 0.1 1 23 179 201 179 201 0.98 5 15 5 6.9e+02 2.4 0.4 2 23 231 253 230 253 0.88 6 15 0.0082 1.1 11.2 1.5 1 23 260 282 260 282 0.94 7 15 6.3e-05 0.0088 17.8 0.5 1 20 288 307 288 309 0.96 8 15 0.00083 0.12 14.3 4.1 1 23 321 344 321 344 0.96 9 15 0.011 1.5 10.8 0.5 3 23 351 373 349 374 0.92 10 15 1.9 2.6e+02 3.8 3.3 3 23 381 401 381 401 0.97 11 15 0.032 4.4 9.3 0.5 1 23 406 428 406 428 0.91 12 15 0.0013 0.18 13.7 1.7 3 23 436 456 434 456 0.96 13 15 0.007 0.97 11.4 3.0 1 23 462 484 462 484 0.98 14 15 2e-05 0.0028 19.4 1.2 1 23 490 513 490 513 0.97 15 15 6.4e-06 0.00088 21.0 0.4 1 23 606 629 606 629 0.96
Sequence Information
- Coding Sequence
- ATGGCTACGCTTACCCATTTCGACCCTGAGACACAAAGcttaaaacagaaaaaacacttttggaCGGGGTTGCCAAAGCCAACAACCATTGATTTAGTTGGTGGTATATCATGCCACATTTGTCAAAAGACATTagcaaataaaaaagattttgataCTCATTATGTACTGCATAATACTGGCAACAAAGATATAGTTTATACTTGTGTGGTGTGTCATAAGCAGATAGCCGGTTATCCGAGTTTCCGAGGCCACTGTTACACTATGCATGTCATAAAGGGGAGATTCAAATGTCAAtactgtttaaaattattttccaaGTCAACGGCCATAAATGAACATGTGAAAATCATGCACAAATTCAAATGTACTGTCTGCAACAAAGAATTTACATCAAAGAAAGAACttcatttgcataagtttattcaTGATAGCAATCATGACACACCACCATTTAATTGTCAGTCATGCAAAATGAAAATAGAATCAATTGAAGGGTGTAAGGAACACATATTTAAACATTGCTTAGACATTTATTCATGTCCCATTTGCAACGAAAATATACCGAATAAAGAGAAAGCCAATGATCATCTCAAAACCCATTTCTCTAATGTTGATGATACTGTTTCTGATGGATCAAATGATGTTAAAGAAGAAATTTCTAATGAAAAAGGTCGTGAAGTTTCTATATCATGCTTGTTCTGTTCTACTGATTACAAAAATAGAGTTGAGTTTGATGCACATTTCTCCTGGATGCATGGCGAAGAAGATATTGTCTATACATGTGTTGAATGTGGGGAACAGTTTGAAAAATATTCCAAATTTAACAGCCACACCTATGATCATTATGCAAAAAAAAGATAtcaATGTGACTTGTGTTCCAAGGCCTTCTGCCGGTTGTCGCTCCTGGTCAGCCACATGTCAGCATGTCAAGAAGATTCTGAGGCCTCCGGCATGCCTTTTATATGTGCACATTGTAAATGTCGCTACAGTAGTGCAATTACATTACGGAGGCACATGCGTAACATTCATGACATTTTGCATCTTATCTGCCCAGAAGAAGGCTGTCAACTCACATTTAGTAAACCAGATCAATTGATATTTCATCAGAAACGCCATCACCAGTCTTCAAAAAACTGGTGTGGACAATGTGGGTTATATTTCAAGTCACTTCACTCATGCGAACGCCATCTCGATATACACAAAAAGAAATTATACATTTGTCCAGTTTGCAATCGTCATTacagtgacaaaaatgttataGTGAACCATGTGTCTCAACACTTTGAAGCAGTGTTGCATCTATGCAAAGTTTGTGGGAAAGTTTTCAATGCCAAGAATCGTTTAGTTGAACATACCAAGACACATTCAGAAACAAAATGTCATAAATGCCAGTACTGTAGGAAAAGTTTTCTGAAAATAGCACAGTTGCAACAACATTTAAATGTGCACACGGGGTCTAAGCCGTATAAGTGTCCTTTTTGTGAAAAATCTTTTACAAGCTATCCCAATTGGAGCAAACACATAAGCAGAATGCACAATGTTGATGGAAAGAATTATAAAAACATGCTACTCAAGAGTAAGGaagttgttattaataaaaattctgAAAATGAAATTGagaatattttgaataaaaaatttaacactATAAGTAATAATGCTGATAATGCAGTGAAAGTACCAAACAAAACTGATGATTACATATTTCAAGGGTCTGACAAATATACTATAGAATCCAGCAACATTGCTCTTACTATTATTGAGAAAAAAGAAACACTTGAAAATGATAAGAATAATACAGAGGCCGAGTTATACAAGTGTCCTATTTGTGAAAAATTGTTTACATCTAATTCAAACTGGAGCAAACATTTAAACGAAGTGCATAATTTGGACAGCAAGAATTATAAAAACAAGAAGAAACCGAACATTGAAGCATTCACAGATGAAAATGttcaaaaagaaaatattaataatgaaattgaagttttaaataataaaaccgaCAATATAAGTCCTAATACGGATAATACAGCGAAAATATCGAATGAGAACATTGACAATTATATGTTTTATGAAATAACAGAAAACACGATAGAATCAAACAGTATTGATCATACCGTAATTGAAAAAGAAGTagaaacttttgaaaatgttgtaAATGATAAGAATGGTAATCAGTTCGGGAATGTGTTGCCGgagaataaaaatatgtcaattgATGgtatcCAAGGATCGCTGACAGATATATCGCAATTCATTCAAACTGTTGATTGTCCTCCAGAATATGGACCAGAATTTAATACTGGATTGGAATCGAGCTGGGGGAGTACTTTTATTGACCTCGACGACCATAATTTGCCTCACATTGATCCACTCCTAACCATAAAAATTGAAGAGCATAACAAAATGTACGTAGACCGCCAAAATTATTATGAACCTTCAAACATTCAATTTAATAACTATGGCAACACACCCAAATGGGAGCCCCCGGTTCTAACTAAATTCCACCATGATTATACATATGGTTATGGAGACATAGCGGAATCGAACAGGTTAACACTACTAAACAGTgataattttgaagtttttacaTAG
- Protein Sequence
- MATLTHFDPETQSLKQKKHFWTGLPKPTTIDLVGGISCHICQKTLANKKDFDTHYVLHNTGNKDIVYTCVVCHKQIAGYPSFRGHCYTMHVIKGRFKCQYCLKLFSKSTAINEHVKIMHKFKCTVCNKEFTSKKELHLHKFIHDSNHDTPPFNCQSCKMKIESIEGCKEHIFKHCLDIYSCPICNENIPNKEKANDHLKTHFSNVDDTVSDGSNDVKEEISNEKGREVSISCLFCSTDYKNRVEFDAHFSWMHGEEDIVYTCVECGEQFEKYSKFNSHTYDHYAKKRYQCDLCSKAFCRLSLLVSHMSACQEDSEASGMPFICAHCKCRYSSAITLRRHMRNIHDILHLICPEEGCQLTFSKPDQLIFHQKRHHQSSKNWCGQCGLYFKSLHSCERHLDIHKKKLYICPVCNRHYSDKNVIVNHVSQHFEAVLHLCKVCGKVFNAKNRLVEHTKTHSETKCHKCQYCRKSFLKIAQLQQHLNVHTGSKPYKCPFCEKSFTSYPNWSKHISRMHNVDGKNYKNMLLKSKEVVINKNSENEIENILNKKFNTISNNADNAVKVPNKTDDYIFQGSDKYTIESSNIALTIIEKKETLENDKNNTEAELYKCPICEKLFTSNSNWSKHLNEVHNLDSKNYKNKKKPNIEAFTDENVQKENINNEIEVLNNKTDNISPNTDNTAKISNENIDNYMFYEITENTIESNSIDHTVIEKEVETFENVVNDKNGNQFGNVLPENKNMSIDGIQGSLTDISQFIQTVDCPPEYGPEFNTGLESSWGSTFIDLDDHNLPHIDPLLTIKIEEHNKMYVDRQNYYEPSNIQFNNYGNTPKWEPPVLTKFHHDYTYGYGDIAESNRLTLLNSDNFEVFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -