Amor035643.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000028.1:18538770-18566803[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.7e-06 0.00079 21.1 1.3 1 23 280 302 280 302 0.99 2 12 0.00067 0.093 14.6 2.7 1 23 309 331 309 332 0.94 3 12 0.016 2.2 10.2 1.5 1 23 336 358 336 358 0.96 4 12 0.097 13 7.8 2.1 1 23 363 386 363 386 0.97 5 12 0.00091 0.13 14.2 0.6 1 23 390 413 390 413 0.97 6 12 1.7 2.3e+02 3.9 0.2 2 19 426 443 426 446 0.78 7 12 0.36 50 6.0 0.4 2 23 499 521 498 521 0.92 8 12 9.6 1.3e+03 1.5 1.5 1 10 535 544 535 547 0.89 9 12 0.013 1.8 10.6 0.2 3 20 569 586 568 589 0.93 10 12 1e-05 0.0014 20.3 2.3 1 23 595 617 595 617 0.98 11 12 3.5e-07 4.9e-05 24.9 1.3 1 23 624 646 624 646 0.96 12 12 0.00047 0.066 15.1 0.5 1 23 652 675 652 675 0.90
Sequence Information
- Coding Sequence
- ATGATTTTGTTTCAGGAATCTGAAGAAGATTTGGAGGCATTAGCTGAATTAAGGGTGTGTAGAGTATGTTTATCAATAGATGTAAAAATGGACCACATATTAGAGCACAAGCTGAGATTTATATACGAACAGCTGGTGGGGGTTACtATAAGCGCAGAGGATAGACTTCCCAAAATGCTGTGCTTTGAATGCGCCGCCCGTCTGTTGTCTGCCAAAAAGTTAAGAGACACAGCGATTAACTCGCAACATACATTATTGACAGCATTGCCTTTTGACAAAAATATAACATTAAAGGATATAAAGTCactaaaacataattttaattctacacTCAGTCAAGAACATCTCATTAATGGCAATGATGTAATGATAAAAATTGAAGTGAAAAAAGAAAGTAGCATCGCAAGTGATGAAGATAATGTAAGTGATGATGATACAAGAGATGATGGAATGGGTGATAGTAAAGATGATGGAGAAATTGACAATCCAGATGTGTATGAGgaaattaaaatcgaaaaaagtgACATATTGGAAAACACTCTAAGTGTTAATATTGATGATAATAAGTGtttaagtgaaataaaaaagtgtgtGAAACGTAAGAATTCTCAAGTGAAAGAAAGTTCAAGAGCTACAGGGTTCAAGAAGAAAGGGAAAAAAATAGATGTGAAGAATCCATTATCTACTATGGACAGgaACAAAGAATCAGGTGTAAAGAGACTGAAAAAAAAGTTAGGAGTTGATGAATCGCTATTCTCCGTCACCCCTCTTTCGTACGAGGAGCAGATAGCAGAAAGAGAGAAGAGAAAAGAGAGTGATTCTTATAAGGATGCTGTTTTTAAGTGTACCATATGTTACAGAGGATTCCCGAATAAGGAAAACTATGAGTCACATATGATGAGACACAGTGAGAAGAGCGGGGCATTCGAATGTTTTATATGTAAGACTAGATTCAAGATGGCCTACGCTTTAAGAAAACACCTCACAGCACACCATACAGAGAAGTTTAGCTGTAAGAAATGTCCATTTACTACGCGAAACAGAGGCACTGCAAGAAGGCACGAAAATTGGCACTCTGGGGCCAGATATCATTGTCCACATTGTCCGAGTGAATTTGACAAAGTCACAACATACATGGGTCACATAAGAATTAAACACGCTTCAAAATTCGTCTGCGGATTGTGCGGATATACGTTCGTTAGTAAAAAGGGTATAGAAGTCCATAAGAAGAAGAAACACAGGATTTTGGATACCGCGGTGGAGCTCGAAGGACCATATTGTAAAGAGTGTGATGTGAGGTTCATATCCGAAGAGGCTCACGACAGACATCTGAAACTATCATCCCTGCATAGCAACGACCATGATCCCAACAGGTTACGGAACGACTCTCAGAGCTCCCGAAGCAGAAAAGGGATACGGAGTTTCGAAAGGCGGAGCCACATTCACCCAAAACCGCTTGGTCCTTCGGAGCCGGAACGGGAGAAAGGGCCGATGACTTGCGAAAAGTGCGGCCTCGTGCTGAACTCGCTGCACCAGTACGCGGGCCACTTCCTGCGCGCGCACCCCGGCGAGACGTGGACCGAATTGCCGATGGCCAACCTTTACATGTGCGAGCAGTGCGGACGACAGTACCAGGTATGTGCGAGCAGTGCGGACGACTGTACCAGGTATGTGCGAGCAGTGCGGACGACCGTACCAGGTATGTGTGAGCAATGTGGACGACTGTACCAGTATAACAGTCAACTTGAATCTCACATGTGGATCCACACCGGAGTCAAACGGTATCAATGTGAGCACTGCGACAAGTCCTTCGCCAACAAGACGAGCCTCATATTCCACTTGAGAGTGCACGGCGACTACAAAAAGACATTTGACTGTAACATCTGCGGGAAGAGCTTCAGTTACCCGAGCAACCGGAAACGACATATGTTTATACACAGCGATTTGAAGCCGTTCACGTGTGATGTATGTGGGAAAGCGTTCAGAACTGCCGTGGACGCGCGGACGCACTTCGAGCACGTCCACAACAAGAAGCCGTGGCCGAAGAGAGTCAGGCACAAGAGACCAGCGACTACTGAAGCTGAGATATACAGTGGCGAAGATACCGCCGTGTGTTGA
- Protein Sequence
- MILFQESEEDLEALAELRVCRVCLSIDVKMDHILEHKLRFIYEQLVGVTISAEDRLPKMLCFECAARLLSAKKLRDTAINSQHTLLTALPFDKNITLKDIKSLKHNFNSTLSQEHLINGNDVMIKIEVKKESSIASDEDNVSDDDTRDDGMGDSKDDGEIDNPDVYEEIKIEKSDILENTLSVNIDDNKCLSEIKKCVKRKNSQVKESSRATGFKKKGKKIDVKNPLSTMDRNKESGVKRLKKKLGVDESLFSVTPLSYEEQIAEREKRKESDSYKDAVFKCTICYRGFPNKENYESHMMRHSEKSGAFECFICKTRFKMAYALRKHLTAHHTEKFSCKKCPFTTRNRGTARRHENWHSGARYHCPHCPSEFDKVTTYMGHIRIKHASKFVCGLCGYTFVSKKGIEVHKKKKHRILDTAVELEGPYCKECDVRFISEEAHDRHLKLSSLHSNDHDPNRLRNDSQSSRSRKGIRSFERRSHIHPKPLGPSEPEREKGPMTCEKCGLVLNSLHQYAGHFLRAHPGETWTELPMANLYMCEQCGRQYQVCASSADDCTRYVRAVRTTVPGMCEQCGRLYQYNSQLESHMWIHTGVKRYQCEHCDKSFANKTSLIFHLRVHGDYKKTFDCNICGKSFSYPSNRKRHMFIHSDLKPFTCDVCGKAFRTAVDARTHFEHVHNKKPWPKRVRHKRPATTEAEIYSGEDTAVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -