Basic Information

Insect: Apodemia mormo
Gene Symbol: -
Assembly: GCA_036924255.1
Location: JAUPFN010000028.1:17913587-17950132[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00078 0.11 14.4 0.6 1 23 241 263 241 263 0.97

2 10 0.00034 0.048 15.5 0.6 1 23 270 293 270 293 0.95

3 10 9.8e-05 0.014 17.2 0.6 1 23 324 347 324 347 0.98

4 10 0.0059 0.81 11.6 1.9 1 23 351 374 351 374 0.95

5 10 0.076 10 8.1 0.3 3 22 393 412 392 416 0.92

6 10 7.4e-05 0.01 17.6 0.8 2 23 456 478 455 478 0.96

7 10 8.3e-06 0.0011 20.6 2.0 2 23 488 509 487 509 0.97

8 10 0.011 1.6 10.7 0.0 6 23 519 536 518 536 0.98

9 10 7.5e-07 0.0001 23.9 0.6 1 23 542 564 542 564 0.98

10 10 3.8e-06 0.00052 21.7 2.4 3 23 572 593 570 593 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00078	0.11	14.4	0.6	1	23	241	263	241	263	0.97
2	10	0.00034	0.048	15.5	0.6	1	23	270	293	270	293	0.95
3	10	9.8e-05	0.014	17.2	0.6	1	23	324	347	324	347	0.98
4	10	0.0059	0.81	11.6	1.9	1	23	351	374	351	374	0.95
5	10	0.076	10	8.1	0.3	3	22	393	412	392	416	0.92
6	10	7.4e-05	0.01	17.6	0.8	2	23	456	478	455	478	0.96
7	10	8.3e-06	0.0011	20.6	2.0	2	23	488	509	487	509	0.97
8	10	0.011	1.6	10.7	0.0	6	23	519	536	518	536	0.98
9	10	7.5e-07	0.0001	23.9	0.6	1	23	542	564	542	564	0.98
10	10	3.8e-06	0.00052	21.7	2.4	3	23	572	593	570	593	0.97

Sequence Information

Coding Sequence: ATGGTGACTGAAACGTGGAAGTCCCACGCTCGACGGTTAACCGTCCGGAGGTGgacggagcggctggccgaacCTACGGCCGGTCGCCGGACTGTTGAGGCTGTCCGGCCCAATCTCCAAACCTGGCTGGACAGACGGCACGGATGGCTCACGTTCCGACtgacacagTTAAACAGTCGTAAAATCCACACATTATGCTTTATTTGCTTTACAAAATTGAAACAATGCTACAAGTTAATTCAAGAAGCCGACAGTGCAAATAAATTTCTAAAGCAGTTATTTAAAAGTAGTGTCaagattgAAACACCAACGGAGCCATGTTTTCCATTATTAACGTTAAGTTCAGTGCAAGTGTATCACATGTCCATTGATATAGGCATAGAAGAACAGCAGACATTAATAGATAAAGATGTTAAAGAGGAAGAGATTGatgGTACCGAAGATTTTGTGAACCGCTCAATAAAGGAATCGGACTCAGAAGACGACTTGCCATTACAACAAATTAGTATAAGAAAAGATATCAAAAGTGAGGTAGTTGTAAATAGTAAAAGTGAAACAGAAATAGATGGTCAAGAGGAGGTCAGAGTGAGAGGGAAGAAACGGGAGCGGAGAAGAAAAAGTTCAGAGTTAATAGATGCCCGCCTCGTTACCTTGAGCTCGGAGGAGCAGCTCAAAGAAATGCAGCAGCGGGCCACCTCCCTCAATTACCTGAACTCCCCGTACAAGTGCGGTCTCTGCTACAAGGGCTTCATAAATCCATACGCGTATGAGAAACATAACGAAAAACATGACAAGACCAGTGGTGAATTTGAATGTACCATTTGTCGTCTCCGCTATAGCAGCTCAAGGCAGCTCAGAGCTCACAACATGTCAGCTCATGAGAGACGTTTCGACTGTAACTTGTGTTCACACCGCTCACATACTAGGAATCAGGCAAAGGACCATGAAAGGTGGCATAAGGGACACACATATCCCTGTCAGCTATGTGGGGTTAAATTCAGCAAGCCGACGTCGTATTTGACGCACTTGCGGAAATTGCATTCGAGCGAGCACGTGTGTCGTCGATGTGGAGAGAGCTTCGTGGGCAGACACGGCCTCATGTTGCACTTGAGCAAATCGCACAAGCGGGACCAACAGgaTTCGGAAAACCAGTCCGAACCGGCCGAGTCGCGGTTCTGCAGTGAATGTAAAATACAGTTCGTCACGGTGGACGCGTGGAAACGTCACGTGCTTACGTCGTCCAAACACGCCGCCTGGAGTGACAACAGTCCGCTGACCCACCGGGCCCACATGAAGCTCCACTCGCAGTCTTTGAGGCCCAAGTCCAAAGATGGGCTCGAAAAGGCGCCAGCCTTGGCGAAGTTGACTTGTGACCAGTGTGATTCCAGTTTCACATCCAAGTCTCGGCTGCAGGCGCACGTCAAGCGAGTACATCTCGGATTGAAGTACAATAAGAATATAGTTTGCGAGATTTGCGGCAAGAAGTGTACGTCAAACGCGACCCTACGTTACCACCAGCGGCGACATACGGGCGAGCGGCCGTACGCGTGCGCGTGCGGCGCGCGCTTCGCCGACAGCAACCAGCTGCGGATACACGCGCGCGTGCACTCCGGGGAACGCCCGTACAGCTGTGCGCTCTGCGGGAAAACATTCTCACAGAAACCTGCGCTCAACAAACACTTCCGGGTACACACGGGTGCAAAGCCATACGGATGCCACATGTGCAACAAAAGCTTTAGCCAATCCAACTCTCTGAAGTTACATGTCAGGACAGTCCACTTGAAACTGCCGCCTAATAACAAGAAGAAGGCTGTAAAAGAGAAGACCGATGActga
Protein Sequence: MVTETWKSHARRLTVRRWTERLAEPTAGRRTVEAVRPNLQTWLDRRHGWLTFRLTQLNSRKIHTLCFICFTKLKQCYKLIQEADSANKFLKQLFKSSVKIETPTEPCFPLLTLSSVQVYHMSIDIGIEEQQTLIDKDVKEEEIDGTEDFVNRSIKESDSEDDLPLQQISIRKDIKSEVVVNSKSETEIDGQEEVRVRGKKRERRRKSSELIDARLVTLSSEEQLKEMQQRATSLNYLNSPYKCGLCYKGFINPYAYEKHNEKHDKTSGEFECTICRLRYSSSRQLRAHNMSAHERRFDCNLCSHRSHTRNQAKDHERWHKGHTYPCQLCGVKFSKPTSYLTHLRKLHSSEHVCRRCGESFVGRHGLMLHLSKSHKRDQQDSENQSEPAESRFCSECKIQFVTVDAWKRHVLTSSKHAAWSDNSPLTHRAHMKLHSQSLRPKSKDGLEKAPALAKLTCDQCDSSFTSKSRLQAHVKRVHLGLKYNKNIVCEICGKKCTSNATLRYHQRRHTGERPYACACGARFADSNQLRIHARVHSGERPYSCALCGKTFSQKPALNKHFRVHTGAKPYGCHMCNKSFSQSNSLKLHVRTVHLKLPPNNKKKAVKEKTDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -