Basic Information

Insect: Apodemia mormo
Gene Symbol: Clamp
Assembly: GCA_036924255.1
Location: JAUPFN010000001.1:15403478-15430832[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.3e-05 0.0046 18.7 0.7 1 23 123 145 123 145 0.99

2 7 3.4e-05 0.0047 18.7 2.2 1 23 336 358 336 358 0.97

3 7 2.4e-05 0.0034 19.1 0.1 1 23 364 386 364 386 0.98

4 7 3.7e-06 0.00052 21.7 3.0 1 23 392 414 392 414 0.99

5 7 2.1e-06 0.00029 22.5 0.4 1 23 420 442 420 442 0.98

6 7 5.2e-06 0.00072 21.2 0.7 1 23 448 470 448 470 0.98

7 7 0.0056 0.78 11.7 0.1 1 23 476 498 476 498 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.3e-05	0.0046	18.7	0.7	1	23	123	145	123	145	0.99
2	7	3.4e-05	0.0047	18.7	2.2	1	23	336	358	336	358	0.97
3	7	2.4e-05	0.0034	19.1	0.1	1	23	364	386	364	386	0.98
4	7	3.7e-06	0.00052	21.7	3.0	1	23	392	414	392	414	0.99
5	7	2.1e-06	0.00029	22.5	0.4	1	23	420	442	420	442	0.98
6	7	5.2e-06	0.00072	21.2	0.7	1	23	448	470	448	470	0.98
7	7	0.0056	0.78	11.7	0.1	1	23	476	498	476	498	0.96

Sequence Information

Coding Sequence: ATGTTCACCACTAATACAGTGCAGGCCGGCACTGTGCCGACTTTACAATATCAAGAGCACCCTGCTCCCAAGTCACAGGGTAAAAACATTGAAAATGTTCAACAACAAAAAACACAACAGGCTCAACAAACACAACAGgagTTTCCTACATTTTGTTATACTACAAATGTGAACATGATTGGTAAATTAGGCACTGGAACTACAAGTGGTACGGGCAGTGTGGCAGGGGGTGTCAATATTGCACAACTTACAACCAGTGATGACAAGACATGTTACATAGCACAGCCATTTTCCTACAACTATGCACTAGTAAATCAAATGCAAATAGCCCCCAATGGCATACAGAACACCATATCTAATATTAGTTTTAAATGTGATGTTTGTGGTTTGATGTTCGGTCATCTGACTTTGTTGAATGCTCACAAGAGGATACACGCACAAGATTCAGAAAGTAATATAACAGTAGTAGCAGCGGGTGTTAGCACAGCCAATGATGTGTCTGTGCCACCACATATTCAAATTCTTTCATCAGATCCTACAGAGCAACAACATCATGTCCAGATCCAAGACACTAAACCAGTCATAATAGACAAAATACAGAAATGCATCACGTGTGGTGGTTCAATCCCTAACAATCCTAAAAGGAAGGGTCCTAAACTTATAAGATGTGAGAACTGCATAGCTCAAGATTCAGTAGATCAAAGAAATAACCAATTAAACACAACACAAATATTTGTAGCCACAGAGGACAATGTGAAGTTTGAAGTGGGTGGTGTGAGTGGAGTTCAGAATTCATCTGATCCCCTTGCAACGACCCAGCCCAGTCAGCAAACACAGTCAACTCAACaacaacagcaacaacaaaataAACCTTTACCTGGCCACCATCCTGTGAAGAAGAGAAATTTAGCCTCAGTAACTAAATGCCAAAACTGCAATGGTTCTGGGATAATCTTTGTCggcggaaataaaaacaaaaataaccaAACCAACACAGACAAACCATATCATTGTAATATTTGTGGAGGATCATTTTCAAGATATTCATCATTATGGTCTCATAAAAAGCTACATTCGGGTGAAAAGAATTTCAAATGTGGCATATGTGGTATTGCTTTTGCTAAGGcagtgtatttaaaaaatcattcaaGAATTCACACAGGAGAAAAACCTTACAGATGTAGTACGTGTGGTATGCAGTTTTCACAATCGCCGCATCTTAAAAACCATGAACGGACACACTCTGGAGAAAAGCCTTACGTCTGTGAAGTTTGCGACAAAGGTTTTGCAAGGCATGCGACGTTATGGAATCACCGACGTATACACACGGGGGAGAAGCCTTACAAGTGTGAAACGTGTGGATCAGCGTTCAGTCAAGCGGCGCATTTGAAAAACCACGCCAAGGTGCATTCCGGTGAGAAGCCATTCAAGTGCGACATTTGTATCGCGGCGTTCGCAGATCGGTTCGCCTTGAAACGGCACAGAGGGATCCACGATAAATATGGTCAAACCACACCGTTTGCGTCCCGGGCAGCTAATGAGCAAGTGGTGATAGTCCAGCAAACATCACAACAGTCCACGGAACAGCAGAACGCACAGCCCGCCGTCGAAGTGGAGACCAGCACGGAGCAAATTCTATGA
Protein Sequence: MFTTNTVQAGTVPTLQYQEHPAPKSQGKNIENVQQQKTQQAQQTQQEFPTFCYTTNVNMIGKLGTGTTSGTGSVAGGVNIAQLTTSDDKTCYIAQPFSYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAHKRIHAQDSESNITVVAAGVSTANDVSVPPHIQILSSDPTEQQHHVQIQDTKPVIIDKIQKCITCGGSIPNNPKRKGPKLIRCENCIAQDSVDQRNNQLNTTQIFVATEDNVKFEVGGVSGVQNSSDPLATTQPSQQTQSTQQQQQQQNKPLPGHHPVKKRNLASVTKCQNCNGSGIIFVGGNKNKNNQTNTDKPYHCNICGGSFSRYSSLWSHKKLHSGEKNFKCGICGIAFAKAVYLKNHSRIHTGEKPYRCSTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCETCGSAFSQAAHLKNHAKVHSGEKPFKCDICIAAFADRFALKRHRGIHDKYGQTTPFASRAANEQVVIVQQTSQQSTEQQNAQPAVEVETSTEQIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00248484;
90% Identity: -
80% Identity: -