Basic Information

Insect: Apodemia mormo
Gene Symbol: -
Assembly: GCA_036924255.1
Location: JAUPFN010000004.1:17277643-17305541[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0051 0.71 11.8 5.9 1 23 187 209 187 209 0.98

2 11 6.1e-05 0.0084 17.9 1.4 1 23 215 237 215 237 0.98

3 11 3.9e-05 0.0054 18.5 2.5 1 23 243 266 243 266 0.96

4 11 0.031 4.4 9.3 3.3 1 21 272 292 272 294 0.95

5 11 0.00011 0.015 17.1 2.7 1 23 300 322 300 322 0.99

6 11 8e-05 0.011 17.5 5.4 1 23 328 350 328 350 0.98

7 11 0.0055 0.76 11.7 0.5 1 23 358 381 358 381 0.96

8 11 0.0083 1.1 11.2 5.2 2 23 388 409 387 409 0.96

9 11 9.5e-05 0.013 17.3 2.2 1 23 415 437 415 437 0.99

10 11 1.6e-05 0.0022 19.7 4.2 1 23 443 466 443 466 0.96

11 11 8.7e-07 0.00012 23.7 3.3 1 23 480 502 480 502 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0051	0.71	11.8	5.9	1	23	187	209	187	209	0.98
2	11	6.1e-05	0.0084	17.9	1.4	1	23	215	237	215	237	0.98
3	11	3.9e-05	0.0054	18.5	2.5	1	23	243	266	243	266	0.96
4	11	0.031	4.4	9.3	3.3	1	21	272	292	272	294	0.95
5	11	0.00011	0.015	17.1	2.7	1	23	300	322	300	322	0.99
6	11	8e-05	0.011	17.5	5.4	1	23	328	350	328	350	0.98
7	11	0.0055	0.76	11.7	0.5	1	23	358	381	358	381	0.96
8	11	0.0083	1.1	11.2	5.2	2	23	388	409	387	409	0.96
9	11	9.5e-05	0.013	17.3	2.2	1	23	415	437	415	437	0.99
10	11	1.6e-05	0.0022	19.7	4.2	1	23	443	466	443	466	0.96
11	11	8.7e-07	0.00012	23.7	3.3	1	23	480	502	480	502	0.97

Sequence Information

Coding Sequence: ATGATGTTTATCAAGACTCGGTGCTGGATTATAAAGCTCAATTCACCCAATCTTGTTGCACCCAAACCAATGTTCAGGACTTCATCAGAGCTGACGACTGGCCATCATCTAGTCCCGATCCTAATCCACTGGATTATGATTTATGTTAATAGCAatgaagaagaaccagatacaGGAGTAACTTATTTTGTTGATGAAGAAGGCCATTACTACTATCAACCATCAGGGGAGCAGCAAAGCCTAGTATCTTTCCCTACTGAAGGTGAAGCAGAAGAAAACAATGAGgtcaCTGGAGATGTGGTGGATTCAGACAGGTACCAGACAGTCACGTTGGTTCCCTCAGAGTCAGGGAGTGGTGAAGTTAGCTATGTCTTGGTTGTACAAGATGAAACCAAACCTCTTATGAATATTGATATTAAGGTGGATCaggagGAAAAGGGCAATGACGTGTACAATTTCGATGAAGAAGAAGGTGGAGAAGAAGGGTCTGAGGCTGGTGAAGATGCTTCaaagAACAAGCAAAGTTCAACCAAACGAAATAAATACCTGCGGCCACATTTTACTTGCAATTTCTGCTCATACACAAGTCACAGAAGATATTTACTATTAAGACACATGAAATCACATTCTGAAGAGCGACCACACAAATGCAAAGTTTGTGAGCGTGGTTTTAAAACTATTGCTTCTCTGCAAAATCATGTCAACATGCATAATGGGGTGAAACCCCATGTTTGTAAATATTGCAACAGCTCATTTACCACATCAGGTGAATTAGTGCGACATGTTCGATATAAGCACACACACGAAAAACCACACAAGTGCACAGAGTGTGATTATGCCTCGGTGGAGCTATCCAAACTAAGGCGACACGTGCGATGTCATACTGGGGAGAGACCTTATCAGtgCCCGCATTGCACGTATGCATCTCCCGACACATTCAAGTTAAAACGTCACTTGCGAACGCACACGGGCGAGAAGCCGTATAAGTGCGAACACTGTAGCATGTGCTTCACACAATCAAACTCGCTGAAGGCACACAAACTTATTCACAATGtatctgaGAAGCCAGTTTATGCATGTGAACTTTGTCCTGCGAAATGTGGACGAAAAACTGATTTACGTATTCACGTGCAAAAATTGCACACATCAGACACACCTCTTAAATGCAAAAGGTGTGGAAAATCATTTCCAGAtaaatattcttgcaaaatgcACAATAAGACCCACGAAGGAGAGAAATGCTACAAGTGTGAATTGTGTCCATATGCTTCTACAACACTGCGACATCTAAAGTCACACATGCTTAAACATACTGACGAGAAGCCTTTCGTTTGTGATCAATGTGATCAATGTTTCAGgCAAAAACAGCTATTGCGTCGTCATCAGAACTTGTATCATAATCCGAACTATGAGCCAAAACCACCTAAAGAGAAGACTCACTCGTGTCACGAATGCGGACGCACTTTCGCCCATAAGGGTAATCTTATACGCCATCTTGCGGTTCACGATCCCGACTCTGGACACCACGAACGCGCGTTAGCGTTGAAAATCGGTAGACAGAAAAAAATCAAGCTGATTGAAAAAGAAATGGCAAGtGAGATTGATAATTCTGACAATGAAGAGGGTGATAATATGAAATTGGAACTTACAAATAATGAGGTGAAACGAGGTGAATATGTCACTGTTGCTGATGGTGATGGACAACAGTATGTAGTGTTGGAAGTGATACAACTGGAAGATGGCTCTGAACGACAGGTGGCAGTTGTAGCACCGGATTATATAGAAGAGGAAGAAGAACCAGATGAGGAGGAAATAATAAGTGATCAGAAAATCAATTTTAACTTACAAGAAAAGCAAAAGAATTTAGAGCGGAGTATAAAACTGGAGAAAGAAGTGGATACTTGCTTTGGTTTTGATgaagaagaagaagaagaacaaGAAGAAGATGACGTACAGTTTAATGATAAAGTTGTTTTACGATTAGTGTAA
Protein Sequence: MMFIKTRCWIIKLNSPNLVAPKPMFRTSSELTTGHHLVPILIHWIMIYVNSNEEEPDTGVTYFVDEEGHYYYQPSGEQQSLVSFPTEGEAEENNEVTGDVVDSDRYQTVTLVPSESGSGEVSYVLVVQDETKPLMNIDIKVDQEEKGNDVYNFDEEEGGEEGSEAGEDASKNKQSSTKRNKYLRPHFTCNFCSYTSHRRYLLLRHMKSHSEERPHKCKVCERGFKTIASLQNHVNMHNGVKPHVCKYCNSSFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCSMCFTQSNSLKAHKLIHNVSEKPVYACELCPAKCGRKTDLRIHVQKLHTSDTPLKCKRCGKSFPDKYSCKMHNKTHEGEKCYKCELCPYASTTLRHLKSHMLKHTDEKPFVCDQCDQCFRQKQLLRRHQNLYHNPNYEPKPPKEKTHSCHECGRTFAHKGNLIRHLAVHDPDSGHHERALALKIGRQKKIKLIEKEMASEIDNSDNEEGDNMKLELTNNEVKRGEYVTVADGDGQQYVVLEVIQLEDGSERQVAVVAPDYIEEEEEPDEEEIISDQKINFNLQEKQKNLERSIKLEKEVDTCFGFDEEEEEEQEEDDVQFNDKVVLRLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00257186;
90% Identity: -
80% Identity: -