Amor037382.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000031.1:5753009-5757971[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.19 26 6.9 0.6 2 23 2 24 1 24 0.90 2 16 0.014 2 10.4 0.3 2 23 51 73 50 73 0.89 3 16 0.41 57 5.8 1.1 2 23 96 117 95 117 0.95 4 16 2.9e-06 0.0004 22.0 0.5 1 23 121 144 121 144 0.96 5 16 0.11 15 7.7 0.1 3 21 150 168 149 169 0.93 6 16 1.2 1.7e+02 4.3 0.4 3 20 178 195 176 199 0.78 7 16 0.0031 0.43 12.5 1.9 1 20 206 225 206 229 0.89 8 16 0.00039 0.055 15.3 1.1 1 23 234 256 234 256 0.98 9 16 0.38 53 5.9 0.0 2 23 352 373 351 373 0.95 10 16 3.1e-07 4.4e-05 25.1 0.7 1 23 377 400 377 400 0.97 11 16 1.7 2.4e+02 3.9 1.9 3 21 406 424 405 425 0.93 12 16 0.012 1.6 10.7 0.4 1 23 432 455 432 455 0.89 13 16 0.0028 0.39 12.6 1.2 1 20 462 481 462 485 0.89 14 16 7.9e-05 0.011 17.5 0.4 1 23 490 512 490 512 0.98 15 16 1.2e-05 0.0017 20.1 0.4 1 19 518 536 518 540 0.96 16 16 8e-05 0.011 17.5 2.0 1 23 546 569 546 569 0.97
Sequence Information
- Coding Sequence
- ATGGTTTGCGTCTACTGTTGCAATCAATACGATGATCCCAGTGATTACAGGCGACATATGAATGAAGAGCATGATAATTACAACGTGGACACTGCTTTCGCGCATATTGCAACTGCCTGGGATTTTCTCAAAGTTGACTGCACGGAATTGACATGTCGCATTTGTTCAAAAAGCTTTGACAACATCAAAAACATCGCTCAGCATTTGTATGATATTCATAAGAAAGCTATAGATCCAAATATTGATATTGGAATGCAAATGTTTAAACTTGGTGCTGAAAGATGGGTTTGTGCTTATTGTTCAGTAAAACTGCCCAGTCTTCGAAAGCTAAGTCGACATACCAATCATCACTTTCATAAGTATACTTGTGAGACATGTGGAAAGAGTTATATCAAGAAGGAGAATTTAGAACAACATTTGTTATATGGACATAGTAAAACTAAAATTTGTGTCAAGTGCAAGGAGAGCTTCCCGAACGATGAAGCGAGAAGGAAACACATGTTGTCTTCAGAGAAATGTTGGATTTGGGCTTGCTGTTATTGTGGACAAAGATTTATCGCACAGAAGATGAAATTGGATCATTTGGTTGAGGTTCACGGAGAATCTCCTAAAGTGCACACTTGCCCCGAATGCGGTTTGAAGTATCAGAATTGGAATCATTATCAAGCTCATTTCGTTCTATCCCACACGAGTGGTGGATATTCTTGTGACCTCTGCAATAAAAGATTTGTGGTAAAACGAAAACTTGACGAACATCGGAGAGGTCATACTAACGAAAAGCCTTACACCTGTGATGTCTATCCGGAGATTTACAGAGAGCATATGCGACAAGAACACAGCACCTACAATGTAAACACAGCATTTGCAAGTAGCAATTTGAATTACAGTGAATTTCTTAGAGTCGATTGCTACGAAATGGCTTGTCGACTATGTCTCGAAAAATTTGATTACATCCAGCATATGGCTGAACATTTGCACGGAGTTCATGGGATAGATTTAAATCCAGAAGTAGAAGTCGGGATGCAAATGTTCAAATTGGGTGCAGAGCGATGGGTTTGTGCATTATGTCCCGAAAAATTGCCAAGCCTTAGAGAGCTTGGACGACATACAAGTATCCATTATCACAAATTTACTTGTGAAACATGTGGAAAATCTTACATTAATAAGGAGAATTTGCTTCGGCATATAAAATACGGGCATAGTGAaacgaaaatttgtatgaaatgtAGAAGAGAATTTCCGAGTTGTAAGACAAGAAGGGAACATATGTTGTCTTCAGAGAAATGTTGGCCTTACGTTTGTGGGACTTGTGGGAAACGATTTATGTCTACGAAATTGAGAGAGGCACATAGAACCGAAGTCCATGGACATGCTCCAAAAGTTCACACATGTCCAGAATGTGGTGCTAGATTTATTAAGTGGTTTTCATATCGTTCCCATTTTGTTTTGACGCATACAAACAATAATTATGCTTGCAGTATCTGTGGTCAAAAATTTGAATTGAAAAGGTCGTTGGATGAACATCAACGGATGCATACGAAAGAAAGACCGTTCGTGTGTGaagtttgtaataaaacttttgcgaggaagaaaaatttaattcagCACAGCTGGATACATAAAGAACAGAAAAGATTTGAATGCACGTTATGCAATAGACAATTCAATCAAAGAGTTAGTTGGAAAACTCATATGAAATCAAATCATCCGGAATTAGTCACATTttga
- Protein Sequence
- MVCVYCCNQYDDPSDYRRHMNEEHDNYNVDTAFAHIATAWDFLKVDCTELTCRICSKSFDNIKNIAQHLYDIHKKAIDPNIDIGMQMFKLGAERWVCAYCSVKLPSLRKLSRHTNHHFHKYTCETCGKSYIKKENLEQHLLYGHSKTKICVKCKESFPNDEARRKHMLSSEKCWIWACCYCGQRFIAQKMKLDHLVEVHGESPKVHTCPECGLKYQNWNHYQAHFVLSHTSGGYSCDLCNKRFVVKRKLDEHRRGHTNEKPYTCDVYPEIYREHMRQEHSTYNVNTAFASSNLNYSEFLRVDCYEMACRLCLEKFDYIQHMAEHLHGVHGIDLNPEVEVGMQMFKLGAERWVCALCPEKLPSLRELGRHTSIHYHKFTCETCGKSYINKENLLRHIKYGHSETKICMKCRREFPSCKTRREHMLSSEKCWPYVCGTCGKRFMSTKLREAHRTEVHGHAPKVHTCPECGARFIKWFSYRSHFVLTHTNNNYACSICGQKFELKRSLDEHQRMHTKERPFVCEVCNKTFARKKNLIQHSWIHKEQKRFECTLCNRQFNQRVSWKTHMKSNHPELVTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -