Amor023223.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- ZIPIC
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000016.1:36581836-36583248[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.035 4.8 9.2 0.1 2 23 151 172 150 172 0.93 2 11 0.0003 0.041 15.7 0.3 1 23 178 201 178 201 0.95 3 11 4.6e-06 0.00064 21.4 0.8 1 23 208 230 208 230 0.98 4 11 0.00039 0.054 15.3 0.7 1 23 236 258 236 258 0.99 5 11 1.4e-05 0.0019 19.9 1.3 1 23 264 286 264 286 0.98 6 11 0.00068 0.094 14.6 3.8 1 23 292 314 292 314 0.98 7 11 5.5e-05 0.0077 18.0 0.3 3 23 322 343 321 343 0.97 8 11 0.0074 1 11.3 0.3 2 23 349 367 348 367 0.86 9 11 5.5e-05 0.0077 18.0 1.3 1 23 373 396 373 396 0.95 10 11 0.0081 1.1 11.2 0.1 1 23 402 427 402 427 0.95 11 11 1.1e-05 0.0015 20.3 2.7 1 23 433 456 433 456 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCCTTATTATGTAGAATTTGTCTAGATAAAACCGGTGCCGTGTCAGTTTTCGATAAAGAAAATGATAATATTCAATACAACACAAAAATTATGCGGTTGGTGAACATTAATATATCTGAAGATGATGGACTACCATCGATGCTATGTATGAATTGTGTTAGCGATTTACATGTTTCATACCAATTTGTGCAAAAATGCGAAACTTCAGACAGAGCACTACGATGTATCAGCGCGCCAATAGATTTCTACACGGATTTAGAACCCAAAATGGAAGTTACAGAACAAATTAAAGTAGAATTTGAAGACACTGACAAACATGAAAGTATAGATGATTTCCTATTAAACTGTCCCAAGGAATGCTACAATAGTGAACAAAGCCCAAGTGTTGAGGCTAAAGAAAAAATTCAAAAGAAAAAGGTACGTCAACGGAAACTGGGGCCTATCCAGTGTATTATATGTGGACTAATGGCTATAAGCACTTCTGCAATGGAGACACACATGCGAACACACACTGGCGAAAAGCCCTATGCCTGTTCATCTTGTGATGCGCGATTTCCAACGAAAGGTGCATTGAAAAGACATAATGAAACATATCATTTAGCTAGAGAGAGGAAGTTCACATGTGAAACTTGCGGAAGTAGTTTCTATAGAAAGAGTGATATTATTACACATATGCGGGTTCATACAGATGAGAGGCCATATGTTTGTGCGATATGTTTAAAACAGTTTCGTCAAGTGGCTTCTAGGAATAGACATCAAAGAATGCACACTGGAGAAAAGCCATACTCTTGTTCCATTTGTGATAAAAGGTTTAGTGAGAAGAACCTTGTGAAGAAGCACCAGAGTGTGCACAGTGAGGTGAGAAATTTCACTTGCCATCTGTGCAGCAAGTCAATGAAATCAAGAACAGCGTTGAACACTCATATGAAGCTGCACAGgaatgaaaaacaaaatatatgtagtTTTTGTGGAATGGCATTTGCAATGAAGGGTAATCTTCAAACTCATACAAGGAGAGTGCACTCGGAGAAATCAGGGCAATGTGCAGTTTGTTTGAAGACATTCTCGGATCTGGAGGCACATATGAGAAAGCATACAGGCGAAAAACCTTACACTTGTGAAATGTGTAATGCAGCATTTGCCACCAAAAGAAGTCTTGCCCATCACATGTtgtttaaacataataatactgAAAGATTTAAGTGTTCTGTAGGAGACTGTACGAAAGCTTTTCCTACAGCAGCAATGCTGGAGTTTCATTTGTTAAAACAGCACACTAACCACACTCCATATATATGTCAACATTGCTCCCGTGGTTTCTTCCGTAATAGTGATCTTTCCCGACATTTACGGGTTAATCACATGGATATTCAGCTTAAATCATGTATTAAAGCTGTACTAGTCTAA
- Protein Sequence
- MESLLCRICLDKTGAVSVFDKENDNIQYNTKIMRLVNINISEDDGLPSMLCMNCVSDLHVSYQFVQKCETSDRALRCISAPIDFYTDLEPKMEVTEQIKVEFEDTDKHESIDDFLLNCPKECYNSEQSPSVEAKEKIQKKKVRQRKLGPIQCIICGLMAISTSAMETHMRTHTGEKPYACSSCDARFPTKGALKRHNETYHLARERKFTCETCGSSFYRKSDIITHMRVHTDERPYVCAICLKQFRQVASRNRHQRMHTGEKPYSCSICDKRFSEKNLVKKHQSVHSEVRNFTCHLCSKSMKSRTALNTHMKLHRNEKQNICSFCGMAFAMKGNLQTHTRRVHSEKSGQCAVCLKTFSDLEAHMRKHTGEKPYTCEMCNAAFATKRSLAHHMLFKHNNTERFKCSVGDCTKAFPTAAMLEFHLLKQHTNHTPYICQHCSRGFFRNSDLSRHLRVNHMDIQLKSCIKAVLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256192;
- 90% Identity
- iTF_00256192;
- 80% Identity
- -