Basic Information

Insect: Apodemia mormo
Gene Symbol: -
Assembly: GCA_036924255.1
Location: JAUPFN010000031.1:5698912-5718525[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.068 9.5 8.3 2.3 1 23 68 91 68 91 0.93

2 24 4.6 6.3e+02 2.5 0.4 2 23 122 143 121 143 0.83

3 24 0.0014 0.2 13.6 2.5 1 23 165 187 165 187 0.98

4 24 0.00059 0.082 14.8 0.4 1 23 191 213 191 213 0.95

5 24 0.037 5.1 9.1 1.6 1 21 218 238 218 241 0.83

6 24 0.02 2.7 10.0 3.0 1 23 247 270 247 270 0.95

7 24 1.8e-05 0.0025 19.5 0.6 1 23 277 300 277 300 0.98

8 24 1.6e-05 0.0022 19.7 1.9 1 23 306 328 306 328 0.97

9 24 5.5e-07 7.6e-05 24.3 3.2 1 23 334 356 334 356 0.99

10 24 2.1 2.9e+02 3.6 0.4 2 23 541 563 540 563 0.94

11 24 0.0011 0.15 13.9 0.1 1 23 587 609 587 609 0.98

12 24 0.00046 0.064 15.1 0.2 1 23 613 635 613 635 0.98

13 24 0.0078 1.1 11.2 4.0 1 23 640 663 640 663 0.96

14 24 0.034 4.8 9.2 0.4 2 23 670 692 670 692 0.92

15 24 0.56 78 5.4 1.5 1 23 744 766 744 766 0.90

16 24 0.03 4.1 9.4 0.3 2 23 794 816 793 816 0.95

17 24 4.6e-06 0.00064 21.4 3.7 2 23 840 861 839 861 0.97

18 24 0.041 5.7 9.0 0.2 2 23 865 886 864 886 0.95

19 24 0.11 16 7.6 3.4 1 23 891 914 891 914 0.96

20 24 3.4 4.7e+02 2.9 2.6 2 23 926 948 925 948 0.90

21 24 0.011 1.5 10.8 1.2 1 23 954 977 954 977 0.95

22 24 5.8e-07 8.1e-05 24.2 2.1 2 23 982 1003 981 1003 0.97

23 24 0.00036 0.05 15.4 2.9 1 23 1009 1031 1009 1031 0.97

24 24 0.00095 0.13 14.1 1.8 1 23 1037 1060 1037 1060 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.068	9.5	8.3	2.3	1	23	68	91	68	91	0.93
2	24	4.6	6.3e+02	2.5	0.4	2	23	122	143	121	143	0.83
3	24	0.0014	0.2	13.6	2.5	1	23	165	187	165	187	0.98
4	24	0.00059	0.082	14.8	0.4	1	23	191	213	191	213	0.95
5	24	0.037	5.1	9.1	1.6	1	21	218	238	218	241	0.83
6	24	0.02	2.7	10.0	3.0	1	23	247	270	247	270	0.95
7	24	1.8e-05	0.0025	19.5	0.6	1	23	277	300	277	300	0.98
8	24	1.6e-05	0.0022	19.7	1.9	1	23	306	328	306	328	0.97
9	24	5.5e-07	7.6e-05	24.3	3.2	1	23	334	356	334	356	0.99
10	24	2.1	2.9e+02	3.6	0.4	2	23	541	563	540	563	0.94
11	24	0.0011	0.15	13.9	0.1	1	23	587	609	587	609	0.98
12	24	0.00046	0.064	15.1	0.2	1	23	613	635	613	635	0.98
13	24	0.0078	1.1	11.2	4.0	1	23	640	663	640	663	0.96
14	24	0.034	4.8	9.2	0.4	2	23	670	692	670	692	0.92
15	24	0.56	78	5.4	1.5	1	23	744	766	744	766	0.90
16	24	0.03	4.1	9.4	0.3	2	23	794	816	793	816	0.95
17	24	4.6e-06	0.00064	21.4	3.7	2	23	840	861	839	861	0.97
18	24	0.041	5.7	9.0	0.2	2	23	865	886	864	886	0.95
19	24	0.11	16	7.6	3.4	1	23	891	914	891	914	0.96
20	24	3.4	4.7e+02	2.9	2.6	2	23	926	948	925	948	0.90
21	24	0.011	1.5	10.8	1.2	1	23	954	977	954	977	0.95
22	24	5.8e-07	8.1e-05	24.2	2.1	2	23	982	1003	981	1003	0.97
23	24	0.00036	0.05	15.4	2.9	1	23	1009	1031	1009	1031	0.97
24	24	0.00095	0.13	14.1	1.8	1	23	1037	1060	1037	1060	0.96

Sequence Information

Coding Sequence: ATGCCTTGTGTAAACTTGTTGCTCATGCACGTGTGTTTATCATTTTTAGGTGAAAACGACGATGAGAACCTCCATATGGATACACATTTGAGAAATATCAGAAAACTCCAAGATTTGGATGATATCCAAACTATAAAACGTAATGCTCGTATTTTACTGGAAAATACAACTATCTGTCCTTTTAAATGGAGgagaaatatgtttatttgttttcaCTGTGACCATGAATTTTTGGATTTATCCAATTTACGGCAGCATAATCTTATAGTACATGAATCTCAGTGTCCAGTACAAATTCAACATGCAATATCGGAATACAGTAAAAACAAGAGTGTTTTAGTTAAAGTAGACATAACTGATACAAGCTGTAAAATATGTGGACAAAGAATGGatttttctgatataaaaaatcacctGAATGAAGAACATAAGacatgtatagatttaaatgtAAAGGATGGTGTACTTCCATTTAAAGTATCTAAAAATAACTACACATGCGCACTTTGTGATAAAAAATACGATGAGTATAAAACGTTAAACCATCATATGAATGAACACTATCAGAATTTTATATGCGACCAGTGTGGTACaggttttattacaaaaagtcGTTTGAGAATTCATGCATTTTCTCATGAAACTGGATCTTTTGCATGCGAAATATGTAACAAAACTTTTCGTTCAATGAATTCTAAGAATGAACATTTCGCGCATGTTCATAAAAAAGTTAAGAGACATCGTTGTTTGCAATGTCGTGAGGCCTTTAGTAATTATTATCAAAGGAACAAACACATGTCCTTAGTGCACGGGATGAAATTAAAAGAGTTTAAATGTTCTTATTGCACTAAAGTGTTTACTTTAAGTGGAAAATTAGGTGTTCATATAAGAActgttcatttaaaaataaaaagacatTCGTGTAGTATATGCGAATGGAAATTTTATTCTAAATCAGAGTTGAAAGATCATATGATAAGACACAGTGGAGATCGTAAATATCAATGCAACATAtgcaaaaaattctacacaagaAAGTACACATTAACGGAACATATGCGAATTCATGAAAATGACAGACGATTTGTGTGTGGTGCTTGTGGGCTGGACTGTGAATTAACGTCGGATAATGAAGCTCCACTTCAAAGAATCAGACCACTTTTTCAAGTAGCATATGATCGGACTCTTTGTAAACCATTGGGTACGATTTCCAACTTCAAAAAGATACATAAGGCCAATATACAATCATCTTCAGTTATGAGTGTAAGGGATTATACACCTTCACGAAGTCCGTCTCCTCTATCTTTAGATATGATGGAAATATCACCTAATACACCTATAATTAATACATCACCAGTCGTACAAGCACCAATGCCAATTTCAGCTAAGTCTGAAGAAAAAACAGACTATCGTCAAAATGCATTATCCGTTTTTGAGTTTTCTACAGTTTACCCTTTTATTTATGGAAACAACAAATTCAAATGTTTTGTTTGTGCACAGCCTTATCTAGAATTGGGGCCTTTGAGACAACACATGAATGATTCTCACACATTCACAGCTATCAAGAGACTTCTAAATAACCGACGACAAAACGTACTAAAAGTTGATGTTAGCGTTTTAATGTGTACTATATGCTCTTTTAGACCTAAGGATTTACCTGAATTAAAATATCACTTAAAAAAAGACCATAAAAAGCGAATAGATTTGGAATTGCAAGATAATATGATACCATTTAAATTAGATGGAGACACTACTGGatataaatgtgcgatatgcaATGAGAATTTCATTAAAGTGCGTACATTAGTTATACATATGAGtgttcattttaataattatagctGTGAGATTTGTGGGTCTGGATTCATGACGTTACGTCTACTGAAAAAACATTTGGAAGTACACGAAACTGGTAATTTTCCGTGTGAGAAATGTCATAAAGTTTTTAGTACGACTCATAAAAGATCTCTACACGTAAGAGTGGTTCATTTGAAACAATATCCACGGAGGTGTCCTATGTGTCCAGAAAGATTTAATTCGAATTACCGAAGGACAATTCATCTACAAGATGTTCATAATCAGTCTACTCGAGTGCATAAATTGTTATCGAGCACAGAGCGCCCATCGCCGCGGACAAGCGTATGGCAAATGACTATTTATGAACGGCTAAATGCCGCTACTTTTCTAGAATTTACTACAGTCAGACCCTTCTTTTACCAACAAGCCAATTtcaaatgtttttactgtaccGAAGTGTTCCCAGAAATACATTCAGTATTACAACATACAGCATTCCATACGGTTCCTGATAGATCAAGTCTTCTAAAGCAATACTTAAGAAAAGGTAAACGAGTTATAAAAGTGGATATATCTGGATTGAAATGTAAAATCTGTGAACAATTATTTTCAGAACTTGATGATATAAGAAAACATTTAACGAGCATTCATAGGAAAGATTTTAATTCAGCTGGAAATGGCTTAATGGCTTATAATTTAACTATTAATAATGGTCTTCTTTCTTGCCACAAATGTGGGAAgacatttaatactttttttcttCTGAACCGTCATATGAATGTTCATTTTAGCGTTGTCTGTGAAACTTGTGGATTAGGATTTATATCTCATCAGCGATTAATTAACCATAGAGTTGTTCACCAAAATGGAATTCATAAATGTGAAAAATGTTCAGAAGTACTTCCTACAAAACTTAAACTTAGATACCATATGTTCAAAAAGCATGAAGTAACAAACGCTAAAAGAGTGAAACCATTAAAATGTCCACATTGCTTGGAGAGATTTGCAGAGCACTATAGAAAAATGACACATTTAAAAGAAGCCCACGGAATTACATTCACGTTTGATTGTCAAGTCTGCAAATCCACTTTTCCAACGCGAAGAGCGCTAACTGAACATACTACTAAACaacatacacaaaaaatacaGTGTAAAGTTTGTGGAAAATGCTTTGGTACAAAATCCTTATTGAAAATGCATATGCGAGGTCATACAGGGGAAAGAAATTTCTTTTGTAGTGTATGTCAAAAAGCTTACATGCACGAAAGAACGTTAAGGCAACATATGAGAGTGCATGGACCAGTTTGGAAATTTATTTGTTCAGAATGTGGAAGTGGTTTTCATAATCGAAATGATTATAATAGACACATGAAACAGTGGCATCCACAATGGCAGTTTAAGAATTTCGTTAAGAACTTTGGCACAGAGATTACTAATTAA
Protein Sequence: MPCVNLLLMHVCLSFLGENDDENLHMDTHLRNIRKLQDLDDIQTIKRNARILLENTTICPFKWRRNMFICFHCDHEFLDLSNLRQHNLIVHESQCPVQIQHAISEYSKNKSVLVKVDITDTSCKICGQRMDFSDIKNHLNEEHKTCIDLNVKDGVLPFKVSKNNYTCALCDKKYDEYKTLNHHMNEHYQNFICDQCGTGFITKSRLRIHAFSHETGSFACEICNKTFRSMNSKNEHFAHVHKKVKRHRCLQCREAFSNYYQRNKHMSLVHGMKLKEFKCSYCTKVFTLSGKLGVHIRTVHLKIKRHSCSICEWKFYSKSELKDHMIRHSGDRKYQCNICKKFYTRKYTLTEHMRIHENDRRFVCGACGLDCELTSDNEAPLQRIRPLFQVAYDRTLCKPLGTISNFKKIHKANIQSSSVMSVRDYTPSRSPSPLSLDMMEISPNTPIINTSPVVQAPMPISAKSEEKTDYRQNALSVFEFSTVYPFIYGNNKFKCFVCAQPYLELGPLRQHMNDSHTFTAIKRLLNNRRQNVLKVDVSVLMCTICSFRPKDLPELKYHLKKDHKKRIDLELQDNMIPFKLDGDTTGYKCAICNENFIKVRTLVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNFPCEKCHKVFSTTHKRSLHVRVVHLKQYPRRCPMCPERFNSNYRRTIHLQDVHNQSTRVHKLLSSTERPSPRTSVWQMTIYERLNAATFLEFTTVRPFFYQQANFKCFYCTEVFPEIHSVLQHTAFHTVPDRSSLLKQYLRKGKRVIKVDISGLKCKICEQLFSELDDIRKHLTSIHRKDFNSAGNGLMAYNLTINNGLLSCHKCGKTFNTFFLLNRHMNVHFSVVCETCGLGFISHQRLINHRVVHQNGIHKCEKCSEVLPTKLKLRYHMFKKHEVTNAKRVKPLKCPHCLERFAEHYRKMTHLKEAHGITFTFDCQVCKSTFPTRRALTEHTTKQHTQKIQCKVCGKCFGTKSLLKMHMRGHTGERNFFCSVCQKAYMHERTLRQHMRVHGPVWKFICSECGSGFHNRNDYNRHMKQWHPQWQFKNFVKNFGTEITN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -