Amor006773.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000005.1:14082971-14087188[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0071 0.98 11.4 0.9 3 23 22 43 21 43 0.94 2 24 9.9 1.4e+03 1.5 1.2 3 23 399 421 398 421 0.84 3 24 0.25 34 6.5 0.3 1 22 426 447 426 447 0.95 4 24 4.8 6.7e+02 2.5 0.3 1 22 489 510 489 512 0.82 5 24 0.0034 0.47 12.4 0.4 3 21 523 541 521 542 0.94 6 24 0.42 58 5.8 0.0 3 23 551 572 549 572 0.89 7 24 0.0043 0.6 12.1 0.1 3 23 592 613 590 613 0.96 8 24 0.00073 0.1 14.5 2.0 1 23 619 642 619 642 0.96 9 24 0.09 12 7.9 0.0 1 23 668 691 668 691 0.90 10 24 0.013 1.9 10.5 3.4 1 23 696 718 696 718 0.97 11 24 0.0068 0.95 11.4 0.2 1 23 724 747 724 747 0.95 12 24 0.0017 0.23 13.4 1.3 1 23 760 782 760 782 0.97 13 24 0.00013 0.018 16.9 1.8 1 23 834 857 834 857 0.97 14 24 0.0012 0.16 13.8 1.6 1 23 928 951 928 951 0.96 15 24 0.0015 0.2 13.5 1.5 2 23 976 998 975 998 0.95 16 24 0.062 8.6 8.4 0.1 2 23 1004 1026 1003 1026 0.93 17 24 0.0087 1.2 11.1 0.2 1 21 1069 1089 1069 1090 0.94 18 24 0.00088 0.12 14.2 0.6 1 23 1100 1122 1100 1122 0.93 19 24 0.00019 0.026 16.3 0.4 2 23 1212 1234 1212 1234 0.93 20 24 1.3e-07 1.8e-05 26.3 1.1 3 23 1241 1261 1240 1261 0.98 21 24 0.0006 0.083 14.7 0.0 3 23 1280 1300 1279 1300 0.96 22 24 0.087 12 8.0 0.0 1 23 1323 1345 1323 1345 0.97 23 24 0.0065 0.91 11.5 0.4 1 23 1351 1374 1351 1374 0.95 24 24 6e-06 0.00083 21.0 0.9 1 23 1382 1405 1382 1405 0.96
Sequence Information
- Coding Sequence
- ATGCGTCCATCTGGCGAGACCCTTGCTGCTCGTCAAGGTATCCAGCAACTGGCATCGAAGGATTGTTTGGTTTGTGGACGAAGTTATAGGTACTCGCATAATGCCCGAAGACATGAACTATCTGCACATAATTTTGATAGATATACCAACAAGACTGTCCCTAAAAAACAGACAACCCTTATGCAGCCAAAATTAAGGCCTAATCCCTTTAATCCAAAAGCACGTTTAATGCCTAATCCTATAAGTCATAAAATGCAGTTTTTGCCCAAACCGCCACCTACTAAAATTATACCTCAGAAAATTATTGCCTGTGCTAAACCAATACCTATTAGAAATTCAAAACCTCAGAATAGTTTACCTTATCCTCTTCGAATTAAGGCGCTCAAAGACctacaaataaagaaaaaggaaccacaaattttaaaaactttactgACTTCAAAACCCGAGGTCTTAGTTTCAGAACCTGAAATTCTAAATTCAGGTCCAGAGAGTCCAGAGACTTTAATATCTGAACCAGAAATAGCATCTTTCCAAGTAGAGGCTATTTTATCAGAACCAGATGGCGATGCTCAACAACAACAAGAAGATGATGGtgataataatcataataatcagAGTCAAAATTACGACACTGTTGACATGGAATCTGACAATGAAATAGAAATCGCTCGCCAGCAAGACGCTGATAATCAAAATAATGAGCTCAGTCCAGAACATGAGAATGATGAAAACATTAATACTGAAGAACAAGTTGACAACGAAAAAGATAACCAAGATGATACAAAAGACAGCTTAAGTGAAATGAATAATGGCATCGAATCTGATGCAGCAGGGAAAGAAAAAGCAAAGTATGATAATAATGAGGCCACAGAAGGGGAAGGTGATGGTGATGCACAGGTTGCCGAAGAGCAAAACCATGAAGATAACTATGAAGAAGAGGATGACGAAGATATTCCAATAGGTCTTGCTCCAGTTGTTGAAATCAatgaagaaatacaaacaaactcGTATAATAATGAAAATGAGAATGAAGATGATGAAGATTTTGACGAGTCTGGTAATGCTAATGAGACAGTTGATGGCGAAGAAGCTGATAAAGGCCTAGATCCGGAGAAAATATATGTTACCAAAGCTCAAAGAGACTTTATTACTAAACATCGCGATATAATAGAGCAAATAAATACTAAACAGTGCCTTTGTTGTAACAGAGAATATCCCCGACGCAAGGCTGTTATTCAGCACTTACAAAAAAATGGGCACAAAGTTCCTAAGCACACCTGTTACAATTGTGTTGTTACCTTTGGCCACATCGGAGCATTATTAAGTCACATGAGATCCAATACATGCACTGATCTTtggaaaataatttataatgaaaaTGGAATTACTGACGATCAAGTATTGGAAGATGAACCAAAGGATCCAAAGGTACAATACAAGGATATTTTCAATGCTAGATCTTATGCTTGCAAATTATGTCCAGCCAAGTTTCAACTGAAGCAGTTCATTATGAAACATGTATTAGATGTTCATGAAGATGGACAATCAAGAGTATCCCTTGCTTGTGTTCACTGTGGATCTAGGTTTAAGGATAAGGGAATGTGGAAGAAACATATTCGAAATGGAGAATGCACAGTGTATATTGCTTGTGATTTATGTCCAGAAAAATTCATTAGTATGCAAGATTTCAATGACCATGCATTAGCAGTACATGCTGGAAGCTTTGATCCAGACAATCAAAACAAGTGTGTTGATGGAAGGCCTACTGATTGTCCTATATGTGGTAAGAAGAACAGTAGCTATCCAAATTTGGTTaaacatttgaaaataattCATAATGAAGAAACACCTCACTATTGTCAACATTGCGAAGCTAAATTTGAACAAGCTGCTGATTTAAACAAGCACATTTATACAGAACATTCTGACAGGTCACTAGGTATGCAGTCAAACGAACCAGACATGTCCCTTGTTAAAGAGGAAGCTGAAGAATATCATTATTCATGCACTGAATGCAATGCTATATTTGAAACAGTAGATGCTTGGACTGATCATCAAGTAGCTGAACACAATCAAGTCGCTCACCACTGTGATCAATGTGAGAAGAAATTTTTAAGACCTTCTGAATTAGCTGAACACAAAAATACTCATTTACGAGTGAAGTTTTACCCATGTAGCATTTGTTCAAATTCCTACAGTACTCCTCAGAAGTTGTCTGAACATGTTCAACAAGCTCATCCGGGAGCTAGTACTCTTGCTGCTTCAGACACAGAATTCTTCTGTGATATTTGTATAAGGTCATTTAAAAGTCGTCAGGCTTATTCGAACCATATGCGTATCCATGCCAAGGTGCCCACAACGAACCGTAAACCAGGAGATCTCAGAGGAGGTGGCTTTGCTCCCCAAATTATAGGAAAACCAATTAGGCAATTTCCTTTACAAGTGCAACCCGGTTTTAGTCCCTTCAAACCAAGTTGCAATGTACCAAATGCTCCTTACTCCTGTGATATTTGTGGAAAAGGTTTTATGcataaaaagaatatttggaaGCATAAAAAAGTGCTCCATGCAGATCTTGTTTCTGAAAGAAATGATAGTGAAGAAAACACTATGCATGCTTCCACAGAAGAAGATGACTATAATGTTGATGAAAATGGAGTTCTATTGACAACCCCACAGTTCAATAGTTTCAatttcacaaatattacaaacagcATGCCACAGATGCCACAAATACAGCCACCACAACCTCCTCCACAAGAAATTGTACAACAACAGTTTTCATGTGATCTTTGTTCTAAAAGATTCCCACTCAAAACTAGCTTATGGAAGCACAAGCGAGCGAAACATGGAATTATTAATGCCAGTTCCATTGGAACCCATGATACACATTCACAACCAGTTGGCGAAGGAAGTAGATCGAGTTGCACTATATGCAAGATTACGTTTGCtgataaaaaatcatattaccGTCACAGAAAAAATGTTCACAAGTCTTCTGTGCAAATGTGTAAAATATGTGGGAAACCACTGAACTCTACATTAGAGCTGTACGAACATCTTAAAGCTGCACATGCTCGTGAGTTGCTAGGTTATAATGCAAATCAAAGTTCAAACAAAGCTCAGGAGTTTATACAAGAAGAGCCTGACTATGAGATGGATCAAGATTCTACAGATCCTAGCATTGAATATCAAGCTCACTATCCTTGTGATACGTGTGGAAAACAATTTATAGGACTACTTGCATTACAAAATCACCAGTGTATCAATCAAATTCAATCATCATCACAAACTTTTGATTGTGAGATTTGCCACAAAAGTTACACGTCGATTGCTGCACTTAAAAGTCATCGAGGATGGCATTTACGTTCGCCTGATGGTAAAGCTGCTGCAAATAACTCTGGACTGTGGATGCCCCAAAACAAagttactaataaagttagtaAATACGAAGTTGTGGATGCGTCGCAATTAGCGAAAGTGACACATTCGACCCCAGCTTCTATAGTCAAACGTAAATTGCCTCCAGAAGTAGAAGTAACAGTAGTtaatccaaacaaaaaaatgcGCTCAGATGATTCTGTTGAAATGGAACAACAGAGTCACATGTCTGGTGGAGCAGAGGATAGATATTGTAATTTATGTGATAAAGAATTCACTAAGCGTGCAGCATATCAACGTCATATGGATGAAGTACATCAACCAAATTCAGTGTTTTGCCCAGTCTGTGACAAGAGCTTTACAAGAAAGTCTACTCTTATAGTTCATATGAAAAAACATTACGAAAACGAAGATGGCAATCCTAGTACTTCCATGGAGGAACATGTGCCACCATGTGATATTTGTGGAGAACAATTTGACAATGCTCAAGACTTAGAAAGTCATAGAGCTATGCATGATGGAGAAGAATCCGCGGAATCCGAAGATGACGGGGGAATGCTTCCTGTACAACAGCCTGGTGAATTTACTTGTGGTCAATGTGGAGATGGTGTGGCTACTCCTCGAGATTTAATAGCTCATCGTACAATGCATGCCACACCTACGAaatatttctgtaatatttgCAAAGTTTACTTTGCACGTGCTATAGACTTATCTTCTCATACTCGGGCAAGACACGCAGAGAATGACAAAGTATTTTTCCCATGTGCGATGTGCGACAGGTTTTTCACAAACAAAAAGAGTTTACAAAGGCATATTGAAATGTCACATTGA
- Protein Sequence
- MRPSGETLAARQGIQQLASKDCLVCGRSYRYSHNARRHELSAHNFDRYTNKTVPKKQTTLMQPKLRPNPFNPKARLMPNPISHKMQFLPKPPPTKIIPQKIIACAKPIPIRNSKPQNSLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILSEPDGDAQQQQEDDGDNNHNNQSQNYDTVDMESDNEIEIARQQDADNQNNELSPEHENDENINTEEQVDNEKDNQDDTKDSLSEMNNGIESDAAGKEKAKYDNNEATEGEGDGDAQVAEEQNHEDNYEEEDDEDIPIGLAPVVEINEEIQTNSYNNENENEDDEDFDESGNANETVDGEEADKGLDPEKIYVTKAQRDFITKHRDIIEQINTKQCLCCNREYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDQVLEDEPKDPKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVSLACVHCGSRFKDKGMWKKHIRNGECTVYIACDLCPEKFISMQDFNDHALAVHAGSFDPDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEETPHYCQHCEAKFEQAADLNKHIYTEHSDRSLGMQSNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQAHPGASTLAASDTEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDLRGGGFAPQIIGKPIRQFPLQVQPGFSPFKPSCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVSERNDSEENTMHASTEEDDYNVDENGVLLTTPQFNSFNFTNITNSMPQMPQIQPPQPPPQEIVQQQFSCDLCSKRFPLKTSLWKHKRAKHGIINASSIGTHDTHSQPVGEGSRSSCTICKITFADKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQSSNKAQEFIQEEPDYEMDQDSTDPSIEYQAHYPCDTCGKQFIGLLALQNHQCINQIQSSSQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTNKVSKYEVVDASQLAKVTHSTPASIVKRKLPPEVEVTVVNPNKKMRSDDSVEMEQQSHMSGGAEDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYENEDGNPSTSMEEHVPPCDICGEQFDNAQDLESHRAMHDGEESAESEDDGGMLPVQQPGEFTCGQCGDGVATPRDLIAHRTMHATPTKYFCNICKVYFARAIDLSSHTRARHAENDKVFFPCAMCDRFFTNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -