Amor014080.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000010.1:13218143-13255652[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.8e-05 0.0094 17.7 2.2 1 23 408 430 408 430 0.97 2 18 0.0011 0.16 13.9 0.9 1 20 436 455 436 458 0.94 3 18 1.8e-05 0.0025 19.6 5.6 1 23 477 499 477 499 0.98 4 18 3.1e-05 0.0043 18.8 4.6 1 23 505 527 505 527 0.99 5 18 3e-05 0.0041 18.8 5.3 1 23 533 555 533 555 0.97 6 18 8.6e-05 0.012 17.4 6.7 1 23 561 583 561 583 0.97 7 18 0.0002 0.027 16.3 5.6 1 23 589 611 589 611 0.97 8 18 4.1e-07 5.7e-05 24.7 1.9 1 23 617 639 617 639 0.98 9 18 8.2e-06 0.0011 20.6 7.7 1 23 645 667 645 667 0.98 10 18 7e-06 0.00097 20.8 6.4 1 23 673 695 673 695 0.98 11 18 4e-06 0.00056 21.6 3.3 1 23 701 723 701 723 0.98 12 18 3.9e-06 0.00053 21.7 5.9 1 23 730 752 730 752 0.98 13 18 4.3e-06 0.0006 21.5 6.1 1 23 758 780 758 780 0.97 14 18 2.6e-06 0.00036 22.2 6.0 1 23 786 808 786 808 0.98 15 18 0.00012 0.017 16.9 10.1 1 23 814 836 814 836 0.97 16 18 9.7e-06 0.0013 20.4 5.0 1 23 842 864 842 864 0.96 17 18 0.00062 0.085 14.7 0.3 1 23 871 893 871 893 0.96 18 18 2.2 3e+02 3.5 1.5 1 10 902 911 902 912 0.94
Sequence Information
- Coding Sequence
- ATGAATCAAGATCACCATAGCATCAATACGGGTGGTGGCCAGCCGCCGGGCAATTCCGAGTCACAGGCTCAGAGAGTTCAGTCGTCgcagcaacaacaacaacaacagacAAATAATTTAACTCCTACGACATCTGCCACTGATTTGCGTGTAAATTCAGCGGCGGTCAACGTTGCTTTGTCAAGCGTTGCCAAGTATTGGGTGTTTACGAATTTATTTCCTGGGCCAATTCCACAAGTTTCAGTTTATGGTTTACCTACAAGCACCAGGATTGAAAATGGAAAACCAGTACAGGACCTAGGACAGGCTCATGCCAGCATATTAAATGGTGATCCAAACATAATTCTGGGACACCATGCTGGACAACCACAGGTCACAGTGTCAGCTGGAGGTCAACAGATCCCAGTGTCGCAGATTATTGCAGCTCCGGCTGGACAAGGGCATGAAACACTGGTAGCTCATGGACAAAGTGCTGAACTGGCACAAACTGGTGCTAGTGCACAATCAACAAACAGCAGAGTTGAATTTGTACAACACCACAACATTGACATGGGTCACCACTCACAACAACATATAATGCAGCAACAGTTAATGGCAGCTACACGCCAGGATCATGCTAATCAacagATACAACTAACTGTCAGCGAAGATGGAATTGTGACAGTGGTCGAGCCAGGTGGTGGTAAACTTGTGGAAAAAGAAGAACTCCATGAAACAATAAAGATGCCAAATGATCATACTCTCACAGTTCACCAGCTACAGCAAATTGTTGGACATCATCAGGTGATCGACAGCGTCGTCCGTATCGAGCAGGCGACAGGTGAGCCGGCCAACATCCTGGTGACGCAAAATGCAGATGGAACCACCTCCATCGAGACCAGCGCCGCCGCCGAGCCGCTTATCAAGGACGAGAAGGGCAAGCTCGACCACTACGCCATGGCCGCCGTCTCCGACATCAAGGACATCAAGGGGATAGACCTCAAGAGTGTAGGAGCAATGGGCATGGAAGGTGCAGTCGTGAAAATATCCACGGGTTCGGAGCACGATTTGCACGCCATGTACAAAGTGAATGTAGAAGATTTATCACAGTTGCTGGCCTATCACGAAGTGTTTGGGAAATTGAGTGGCGAGGCTCAACAACAACCAAAGGTCATAAGTGAGGTGGAAGTAGAGCCCGGCACTAGTGCAACTTTGACTGAAACCGACGCATCACCCGGACATCACTCCTGTGACATCTGTGGGAAGATATTCCAGTTCCGCTACCAGTTAATTGTACatagGCGGTATCATGGCGAGAGCAAACCATACACGTGTCAAGTATGTGGATCTGCATTCTCCAACCCTGTTGAGCTTTCAAGACATGGGAAATGTCATCTTGCCGGTAACCCAGAAGAACGACAAGCGAAGCGCCTAGCTCAAGATAAGCCTTATGCCTGTACCACTTGCCACAAGACATTCTCAAGGAAGGAGCATCTTGACAACCATGTAAGAAGTCACACTGGAGAAACCCCCTATAGATGTCAATATTGTGCGAAAACCTTCACGCGCAAAGAGCACATGGTAAACCATGTGAGGAAGCACACAGGGGAGACTCCTCACCGCTGTGAAATATGCAAGAAGAGCTTCACGAGGAAGGAGCATTTCATGAACCATGTCATGTGGCATACTGGTGAAACTCCCCACCGTTGCGACTTCTGTTCGAAGACATTCACCCGCAAGGAGCACCTGCTGAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACCGCTGCAATTTCTGCGCCAAGTCGTTCACGCGGCGCGAGCACCTCGTCAACCACGTGCGCCAGCACACCGGCGAGACCCCCTTCCAGTGCGGATACTGCCCCAAGGCCTTCACTAGGAAAGACCATCTGGTAAACCATGTAAGACAGCACACGGGCGAATCTCCGCACAAGTGTTCGTACTGCACGAAATCATTTACAAGGAAAGAGCACCTCACCAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACCGCTGCTCCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCACCAATCATATACGACAGCATACGGGGGAGACTCCATACAAATGTACGAGCTGTCAGCGTGCGTTCACGCGGAAAGAACATCTCAAGAATCACATCCTCATACACACCGGTGCTGCGACATCGCACCAGTGCACCTATTGCAACAAGAGTTTCGTCAGGAAAGAACATCTCGTCAAACATGTTCGACAACACACGGGCGAAACTCCATTCAAATGCACGTACTGTCCTAAGTCTTTTTCGCGGAAAGAGCATCTAACAAATCACGTTCATCTTCACACCGGAGAGACTCCACACAAGTGTCCCTTCTGTACCAAAACTTTCTCAAGAAAGGAGCATTTAACAAATCACGTTAGAATTCACACAGGAGAATCGCCACACAGATGTGACTTTTGCCATAAAACTTTCACACGCAAAGAACATCTGACGAACCATTTGAAACAACACACCGGAGACACGCCGCACGCGTGTAAAACCTGCTCGAAACCCTTCACCAGGAAGGAACATCTTGTTACGCATATGAGGTCCCACAGTTGCGGTGAACGTCCCTTCAGTTGTGGGGAGTGTGGCAAGTCGTTTCCTCTCAAAGGCAACCTTCTATTTCACGAGAGGTCTCACAATAAGACTGCACCTGCTAAACCCTTCCGCTGTGATATATGTTTTAAGACTTTTATGTGTAAAGataaacaCTAG
- Protein Sequence
- MNQDHHSINTGGGQPPGNSESQAQRVQSSQQQQQQQTNNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTSTRIENGKPVQDLGQAHASILNGDPNIILGHHAGQPQVTVSAGGQQIPVSQIIAAPAGQGHETLVAHGQSAELAQTGASAQSTNSRVEFVQHHNIDMGHHSQQHIMQQQLMAATRQDHANQQIQLTVSEDGIVTVVEPGGGKLVEKEELHETIKMPNDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNADGTTSIETSAAAEPLIKDEKGKLDHYAMAAVSDIKDIKGIDLKSVGAMGMEGAVVKISTGSEHDLHAMYKVNVEDLSQLLAYHEVFGKLSGEAQQQPKVISEVEVEPGTSATLTETDASPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGSAFSNPVELSRHGKCHLAGNPEERQAKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHIRQHTGETPYKCTSCQRAFTRKEHLKNHILIHTGAATSHQCTYCNKSFVRKEHLVKHVRQHTGETPFKCTYCPKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCHKTFTRKEHLTNHLKQHTGDTPHACKTCSKPFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKTAPAKPFRCDICFKTFMCKDKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -