Amor028598.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000021.1:3909811-3911857[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-08 6.6e-05 23.9 0.1 4 37 20 53 17 59 0.91 2 2 4.9 4.7e+03 -1.2 0.0 22 30 156 164 142 166 0.84
Sequence Information
- Coding Sequence
- ATGCCGCGAATATATAAGAAAAAGGAATTTTCGAGGACGGGGCATATAGATGAGGTAGCGATGGAGTCTGCTATAAAAGAAGTCGTAGAAAAAACTTTATCCATAAGAAAATCGGCAGCCAAATACGGCATAAAGCCTTCTACATTAGAATCACGACTtgcaaagataaaaaaaatggctACTGCTGAAGCTCCTTTACGATGTTTTGGATCCAAATATACATCTAAACAGGTATTCACTACAGCGGAAGAAACacttctaaataaatatattgcagaaTGTTCTCGTATGAATTATGGGCTTACACTTGTACAACTTCGGAGATTGGCGTATGAGTTtgcaaaaataaatcatttacaATTTCCCTCTAGTTGGCATCATAATGGGATGGCTGGTTTAGATTGGGCAAAAAGTTATCGCTACCGTAACGCCAACTTAAGCTTAAGAAAACCGGAGAATACAAGCGCTGCCCGTGCCTATGGTTTCAATAAGACTGCAGTCAAtgacttttttaataatttagaagCTGTACTTACGAGATATAATTTTACTTGTGACAGGATTTATAATTTTGACGAGTCAGATTTCTACCGTGATGAGTACTCCGAAAATACACCTGAAAAACAAAGACTTTTAGAAATACAAAAAgcaaagataattaaaaaacaagagCAAGAAAGAAAAAGTAGAGCTAAAGAAATAAAGCGTGCACTAAAGTTGATATCCCAGACTGATAAAATAGCTAACCCGAAGAGACAAAAGAAAGATGCACAGTTGGAGACTGATAGTGAAGATGAAACTGATATAAGTTTCATAGACAGCTCTTCTTCACCTTTATCGACCGAAGGATCTAATTTCGAAGAAGAAATCAATAAGGAAGAACCAGTATTGAGCCACAACATTAGTGAAGAAACTTTTGTGCTAGTAAAATTTGAGAAGAAGTCAACTGTTCTTCATTATGTcggaaaagttttaaaaaaatggcctATGGAATATCACGTCTCTTTTTTAAGAAAGAAACCAGTTTTACCTGCACCTAAATCAGCAAGCACTGCGAGAACTGCAAACATATTCTGTTTTGAACTAAACTTTATTGGATACAATGTTCAgtag
- Protein Sequence
- MPRIYKKKEFSRTGHIDEVAMESAIKEVVEKTLSIRKSAAKYGIKPSTLESRLAKIKKMATAEAPLRCFGSKYTSKQVFTTAEETLLNKYIAECSRMNYGLTLVQLRRLAYEFAKINHLQFPSSWHHNGMAGLDWAKSYRYRNANLSLRKPENTSAARAYGFNKTAVNDFFNNLEAVLTRYNFTCDRIYNFDESDFYRDEYSENTPEKQRLLEIQKAKIIKKQEQERKSRAKEIKRALKLISQTDKIANPKRQKKDAQLETDSEDETDISFIDSSSSPLSTEGSNFEEEINKEEPVLSHNISEETFVLVKFEKKSTVLHYVGKVLKKWPMEYHVSFLRKKPVLPAPKSASTARTANIFCFELNFIGYNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -