Amor016158.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- RTase
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000011.1:7140757-7172183[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-08 3e-05 25.0 0.0 2 38 216 252 215 258 0.87
Sequence Information
- Coding Sequence
- ATGGAAAATAAGTTGGTCACAGTTCttgttttgattgatttttctAACGCCTTTAATTCTGTTGACCATGACATCTTATTATCCATACTGAAATTTTCATCAACAGTACTGAATTGGTTCTCTACTTACCTCCGTAAACGTCATCAGGCTACTCGTTGTGGTCAATCTCTCCCTGGATGGCTTGAATTGGTAGCTGGAGTACCACAAGGTGGTATTTTATCCCCACTGCtcttttctatctttattaattttcttacgcgGTTGCTACATTGTCCATTCCACTTTTACGCTGACGACCTGCAGCTCTACGAGCATACCAACGTAAATGATTTGGGGCGTACAATATCTAAAATGAATGGTGTCCTAGAAGAGTTAAGGATCTGGGCCACAAAATTTGGAGTTAAAGTCAATCCATCGAAGTGTCAAGCGATCATAGTCGGTAGTCAGCGACAGTTGGTTAAGGTTGACATGGATGCGATTCCcccaataacatttaataataacacaatTAAATTCAATTCTATTGTTAAGGACTTAGGCATTCACATTGATAGTAATCTCAATTGGTCGTTCCATACTGCTGAACTATGCCGAAAGGTTACGGGTTTTGGTAAGAAGTTGAAAAAGAGAAGAAAACAATACAGCCAAGAAATTTTGGCAAAGGCATTGAAGGCTGTTAAGAGTGGAATGTCAACAAGTTTAGTTTCTAGAACTTTTAACGTACCCAGAGGAACAATTCAGTTTAGGTTGAaacacaaaaacattaaaagccTTCCAGGTCCGAGCAGCGTGCTTTTTAAAGATGAAGAGGAATCTCTGGTAGAATGGATGCTAGAATCATTTAGGAAGGGATTCCCAAATAGAAGAATAGACCTGATATTGAGTGTGGCAAATATCATAAAACTAACCGATCGTAAAAACCCTTTTAAAAATGGTGTACCGGGGAAAAAATGGTACCATCTTTTTATGCAACGGCACCCAGAACTTGCCCAAAAAATTACAGAAACAATGACAACATCAAGTACATTAGTCTCAGAAGAAGATATCCGGGGTTGGTTTACccaaattgaattatttttaatagagaatggtcattttaatattctctCGGACTCTACTAGAATTTTTAACGGAGATGAATTAAACTTGCAATTATGTCCTAAAAGTGGAGAAATAATTcctttaaaaggtgaaaaatataTGTCAGAAGTCGACATAGCAACGGTAAAATCATCTGTTGCAGTTATTGTAACATTTGGAGCAAATGGAGATATAACACCTCCTCTGGTGGTGTTCCCAAACAAAGCAACCAATGATGCATTGGAAAGTAAGAGCAAAATCAATATAACTTTTACGGAGTCGCGAAGTATGAAAGCCGAACAGTTTTATGATTATATTCAAAACGTTTTTCATCCTTACTTATTACGAACAAAGAGAAAGTTTCCAGTAGTTTTATTTGTAGATGGCAATAAAACCCCACACACCCTGGATATCAGTGAACTCTGTAAGAGCCTTAATATTATTCTCATAGCACTTTATCCAAATGCTGTGAAATTGTTAGAAACACCACATGCAGCGGCTTTTAGACCCTTGAGGTTGGCATGGAAGCGCTCTGTATTGAAATGGAAACGAAGTCACCCTGATGAAACGcttacaaagaaaaattttgtgcCCTTGCTCAAAGAAGCTTTAGAATATGGTGTACAACCTTCAACTGTCATAAATGGTTTTAAAGCAGCAGGGTTGTACCCATGGGATCCTAATgctgtaaattataaaaaatgtccaGGAGCagaagtaaaagacgaatacgacgatgaaaattttcaaacagACACTATTGTTTTGCAAGTATCTGGGGAAGATGAAGATAGAGAGGACATATCCAGCGGGGATAGGATAGTAATATCACCCCATGTGGTAAGAGCAACCACGGGCATTGTACAACTACCGGCTCAAGAAGTAATGTCTATCTTGAaagaaaattacataatatcatGTGCGTATTGGGTGTTAGATGTTACAACATCCTTTGTTGTTACATATAACACACATGCCCCTGTACCTGAGGGAGAGCCCTCTGCAAGCGGGCAGCAAGGAGTGGGATTTATAGGATTAGCTTACCTGATAGGCCTGGTGAAGGAACCAACTCTGGTAAATGGGGTTGCCTGTAAGAAAAGATGGTCGGCAGGCTTAGCTGGCGTGTCCAAGATGAATGCGCTACCAGATAGTTTTATGGACACCATATGGCAATATGTAGTAGATAAGAGGCCCTCCCTTTATAGTCATGTAGAAATTAGGAGAGAGCTTATGACCAAGTACTTGGAAAGTCATAACAGGGACAATGAGCCTGCCGTAGCTAGAGCGGTTTTAAGCCAACTAGATTTAGTTTACAAGGATGCCTATCTGAAATCTGTCAACTTAATGCAGTTATTCACAGAGTCAGGGAGTAGGGTCATAGAGATACCAAGTATACTTGATGAGATTATGAAGTTAAATGCAGAGCTGGCGAGGGTAAAGACAATTGAGGGTACAAAATACAGCACGTGCAGACTCATAGACAACAACAAATACCCAGCCCTTAATCATGCCAATTATCCAAACCTGTATGCTGCCACCCTTGAATGGGCCAGAAGGAGTCGCAAGGTCCAGAAGAACTATCAGGGAAGCAAGTCCCTTATTGATCAAGCCCTTAATCAAGACATAGTCCGCAAGGTGCTGAAGATGGCGTCAGCCAACATAGGCTCCGGATCCCTCACACCAGAGCAAATAGAGTGGTTGAGGGTTAAGAAGGGATACCAGATTCCAGCCACCCCTCTTGCTGAGGTCCTCACAAGGACTGCATCCAAAAGACCGGCCCCCCCATCAGACAGCGACAGGACAGACTCCGAATCGGAGGAAGACTCAGACACGGACAGAAGAAGAAAACACAAGTCCAGGAGGAGGCACTAG
- Protein Sequence
- MENKLVTVLVLIDFSNAFNSVDHDILLSILKFSSTVLNWFSTYLRKRHQATRCGQSLPGWLELVAGVPQGGILSPLLFSIFINFLTRLLHCPFHFYADDLQLYEHTNVNDLGRTISKMNGVLEELRIWATKFGVKVNPSKCQAIIVGSQRQLVKVDMDAIPPITFNNNTIKFNSIVKDLGIHIDSNLNWSFHTAELCRKVTGFGKKLKKRRKQYSQEILAKALKAVKSGMSTSLVSRTFNVPRGTIQFRLKHKNIKSLPGPSSVLFKDEEESLVEWMLESFRKGFPNRRIDLILSVANIIKLTDRKNPFKNGVPGKKWYHLFMQRHPELAQKITETMTTSSTLVSEEDIRGWFTQIELFLIENGHFNILSDSTRIFNGDELNLQLCPKSGEIIPLKGEKYMSEVDIATVKSSVAVIVTFGANGDITPPLVVFPNKATNDALESKSKINITFTESRSMKAEQFYDYIQNVFHPYLLRTKRKFPVVLFVDGNKTPHTLDISELCKSLNIILIALYPNAVKLLETPHAAAFRPLRLAWKRSVLKWKRSHPDETLTKKNFVPLLKEALEYGVQPSTVINGFKAAGLYPWDPNAVNYKKCPGAEVKDEYDDENFQTDTIVLQVSGEDEDREDISSGDRIVISPHVVRATTGIVQLPAQEVMSILKENYIISCAYWVLDVTTSFVVTYNTHAPVPEGEPSASGQQGVGFIGLAYLIGLVKEPTLVNGVACKKRWSAGLAGVSKMNALPDSFMDTIWQYVVDKRPSLYSHVEIRRELMTKYLESHNRDNEPAVARAVLSQLDLVYKDAYLKSVNLMQLFTESGSRVIEIPSILDEIMKLNAELARVKTIEGTKYSTCRLIDNNKYPALNHANYPNLYAATLEWARRSRKVQKNYQGSKSLIDQALNQDIVRKVLKMASANIGSGSLTPEQIEWLRVKKGYQIPATPLAEVLTRTASKRPAPPSDSDRTDSESEEDSDTDRRRKHKSRRRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -