Basic Information

Insect: Apodemia mormo
Gene Symbol: -
Assembly: GCA_036924255.1
Location: JAUPFN010000015.1:36802177-36823692[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 3.7e-09 3.5e-06 28.0 0.0 4 39 145 181 142 185 0.89

2 6 0.00011 0.1 13.7 0.1 2 27 197 222 196 222 0.93

3 6 0.00011 0.1 13.7 0.1 2 27 369 394 368 394 0.93

4 6 0.00011 0.1 13.7 0.1 2 27 601 626 600 626 0.93

5 6 0.00011 0.1 13.7 0.1 2 27 661 686 660 686 0.93

6 6 0.00011 0.1 13.7 0.1 2 27 779 804 778 804 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	3.7e-09	3.5e-06	28.0	0.0	4	39	145	181	142	185	0.89
2	6	0.00011	0.1	13.7	0.1	2	27	197	222	196	222	0.93
3	6	0.00011	0.1	13.7	0.1	2	27	369	394	368	394	0.93
4	6	0.00011	0.1	13.7	0.1	2	27	601	626	600	626	0.93
5	6	0.00011	0.1	13.7	0.1	2	27	661	686	660	686	0.93
6	6	0.00011	0.1	13.7	0.1	2	27	779	804	778	804	0.93

Sequence Information

Coding Sequence: ATGCCAGGGGACGAGCTGTCCCAGGTGAAACACGAGCCAGTGTCAGATGACGATGAAAGCTCTCAATACCATGCAGACTATACTGTATTTCAGAATGATCAGGGTTCGCTGGAAGAACTGGCACCAGCGCCCTCGGGTCCGGCCGCCACGTTGGTGCAAGAAGAACTGCTAATACCTGGTGAAGCTTCACTAGCTACTTTGGAACCAGTTGCGCGTAGTAATTTCTTGGGCTCAGGTCTAATAGAAAGACACGTGAAATTTATGAGAGGGAAGGAAGTCGCGGGTTCTACCGATTTTTTCCCCTTGACTACTGTGAAAGAAGAACCACTTTCAGAAGGAGaaCAACAACAGCAAAGTGGAGATGACTTAAGTGATTCGAACAGTCCCATGGAGCCCGTTCGCCGTGGTAGCCCCAAGTCGTGGACACAACACGACATGGATAATGCGCTGGATGCTCTGAGGAACCATCACATGACTCTCACAAAGGCGTCAGCTACGTTTGGAATACCGTCAACGACACTTTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTGCGGACACCcacccacccacacacacacacacacacacacacacacacacacacacacacacacacaagcaggAGAACGTGGCGAGGACGTGGAGCCCGCGCGACCTCTCCCGCGCGCTGGCCGCGCTGCGCGCCGGACACACCTCCGCCAACAAGGCCAGCAAGGCGTACGGTCAGTgcggacacacacacatacgccaGAACTCACACGTCACACGAGTCACATTCTCATTTACCTTCTACCACACAGGAATAGAGATTGtctgtctttttttataa
Protein Sequence: MPGDELSQVKHEPVSDDDESSQYHADYTVFQNDQGSLEELAPAPSGPAATLVQEELLIPGEASLATLEPVARSNFLGSGLIERHVKFMRGKEVAGSTDFFPLTTVKEEPLSEGEQQQQSGDDLSDSNSPMEPVRRGSPKSWTQHDMDNALDALRNHHMTLTKASATFGIPSTTLWQRAHRLGIDTPKKENVARTWSPRDLSRALAALRAGHTSANKASKAYGQCGHPPTHTHTHTHTHTHTHTQAGERGEDVEPARPLPRAGRAARRTHLRQQGQQGVRSVRTPTHPHTHTHTHTHTHTHTQAGERGEDVEPARPLPRAGRAARRTHLRQQGQQGVRSVRTPTHPHTHTHTHTHTHTHKQENVARTWSPRDLSRALAALRAGHTSANKASKAYGQCGHPPTHTHTHTHTHTHTHTQAGERGEDVEPARPLPRAGRAARRTHLRQQGQQGVRSVRTPTHPHTHTHTHTHTHTHTQAGERGEDVEPARPLPRAGRAARRTHLRQQGQQGVRSVRTPTHPHTHTHTHTHTHTHTQAGERGEDVEPARPLPRAGRAARRTHLRQQGQQGVRSVRTPTHPHTHTHTHTHTHTHTHKQENVARTWSPRDLSRALAALRAGHTSANKASKAYGQCGHPPTHTHTHTHTHTHTHTHTHKQENVARTWSPRDLSRALAALRAGHTSANKASKAYGQCGHPPTHTHTHTHTHTHTHTHTSRRTWRGRGARATSPARWPRCAPDTPPPTRPARRTVSADTHPPTHTHTHTHTHTHTHTHKQENVARTWSPRDLSRALAALRAGHTSANKASKAYGQCGHTHIRQNSHVTRVTFSFTFYHTGIEIVCLFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -