Abak009625.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- nfxl1
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000011.1:5513660-5516490[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 1.5e+04 -5.0 1.9 15 19 127 131 127 131 0.85 2 19 0.3 2.3e+03 -1.5 0.3 4 10 162 168 161 168 0.92 3 19 1.2e-08 9.1e-05 22.2 16.7 1 19 176 193 176 193 0.99 4 19 0.00024 1.9 8.4 13.1 3 19 231 247 219 247 0.92 5 19 0.51 3.9e+03 -2.2 0.2 6 10 272 276 271 278 0.88 6 19 7.7e-05 0.59 10.0 5.6 1 19 282 301 276 301 0.89 7 19 6.3e-05 0.49 10.3 10.1 1 19 337 355 337 355 0.97 8 19 0.0034 26 4.7 8.0 1 12 389 400 389 400 0.94 9 19 0.81 6.2e+03 -2.9 0.8 6 10 410 414 409 414 0.91 10 19 8.7e-08 0.00067 19.4 14.6 1 19 420 438 420 438 0.93 11 19 1 7.7e+03 -3.2 1.0 6 10 467 471 466 471 0.89 12 19 0.016 1.2e+02 2.6 11.6 9 18 486 495 484 496 0.90 13 19 8.3e-05 0.64 9.9 7.0 1 12 506 516 506 516 0.95 14 19 0.63 4.8e+03 -2.5 5.8 14 19 547 552 547 552 0.90 15 19 0.00019 1.4 8.8 5.6 1 12 588 599 588 599 0.95 16 19 2 1.5e+04 -4.2 1.3 6 10 615 619 614 619 0.85 17 19 0.00011 0.86 9.5 14.7 3 19 628 644 627 644 0.92 18 19 1.3e-05 0.099 12.5 9.5 1 16 689 703 689 709 0.87 19 19 1.1 8.5e+03 -3.3 0.5 6 10 739 743 738 743 0.90
Sequence Information
- Coding Sequence
- ATGAAAAAATTTCGAAGAATTCAGGCACAAAATCAGGCTTCGATTGCAAGACATTTGGAAGTACAAAAGTCCATCATAAATATCGAATCTTCTAGTAGTGAAGATGAAAATGAGCAAGTATTGGAAACAGCTGTTGAAAAAGTTTTATCCAGTTACGAATGTGACGGTGGTGATGTCACAAAGACATCCACTTATTTAACTGAAAAATTTCAAACCGGGGGAGCTGTATGTTTGATATGTATATCAACTGTTAAAAAAACTCATGCTATTTGGAGCTGTGAAAAATGCTTTACCTTTATACATTTACCATGCATTCAACATTGGATAAGGGACAGTTTAAGCTACAAACACGAAAAAGGAATTTTGCCATTATGGGGTTGTCCTAAATGTAGAAACGAGTATAAAGAAGATCAAATACCTCAAAAGTATATCTGTTTTTGCGGCAAAGCTGAAGATCCATTATACCAACCATGGTCCATCCCACATTCTTGTGGAGAAATGTGTGGAAAGTTCCTTCAACCAAAATGTGGACACAAATGCATGCTTTTATGCCACCCAGGCCCATGTCCTCCTTGTCCAAAAATGGTATCAATTACCTGTTTCTGTGGAAAACAAACACCTTGTCCACGTAGATGCAATGCAAAAGAATGGTCCTGTGGAATAATATGTAATAAAAAATTCAATACATGTGAACATAAGTGTATTGAAATTTGTCATTTAGAACCTTGTTCACCTTGTTCAGAGAAAGTGCTTACAATGTGCAATTGCAGAAATGAATCTCAATTAAGAAATTGTAATGAACTATTTTGGCAATGCAAGAAACTTTGTGGTAGAAGCTACTCTTGTAATGTTCATTTTTGTGATAAGTTTTGTCATAAAGCAGGCGATTGCAACAATTGTCCATTAGAATTTAACAGAACTTGTCCCTGTGGTAAGAAAACATATGCTATATCATGCAAGCAACAGCAAGTGCCTACCTGTGGCGATACTTGTGGAAAATTATCAGATTGTGGTGTTCATTATTGCAATATGAGATGCCACACAGAAAATTGTGGTCAATGCTCAGAAGTTGTGAGAAAAACTTGCCGTTGTGGCACTTTTAGTAAAGAACTTTTATGCACAAAGGAATTTCATTGCAATAGAAAATGTCCTCAAATGAGACTTTGTGGCAGGCATCCTTGCAATAAAAAATGCTGTGATTGTTTAATTAACAATACCTTTAAAGCTTGTGAAAAGATATGTGATAATACTTTAAACTGCCGCAAGCATAAATGTTCTGCTCCTTGCCATAGTGGACCTTGTTATCCATGTCCTCGTACTATAGTTATTCAATGTCGCTGTGGTAACAGTAAAATTTCTATACCATGCGGCACAGTGAAAAAAATCAAACCACCAAGCTGCAAAAAATTGTGTAAAATTCCTCCAGATTGTCATCATCTCAAAAGGGAATCACATAAGTGCCACCAAGGTGGTTGCCCACCATGTCATAAAATATGCAAGCTAGTTAACAAAAGATGTGGTCATACTTGTGAAGCAATATGTCATACTAAAGTTTGGACTAAAGTGAATCCTAATAGGACTATGAAACCAATTGGACCTTGGGAAAATAAAAAAGAAAAATGGGAATATCAGACTTTTCCTTGTCCACCTTGTAAACTTTCAGTAATGGTTACATGTCTTGGTGGACACGAAACTATACCTTGGCCTTGTTTTAAAGCTGTTTCAAGTTCCTGCCTTAGAGAGTGTAGTCAATTATTAACGTGTACAAATCACTATTGTGAAAAAATTTGTCATAAACTAAATTCGATGAATGACATAAATGATGAAAATAAGTGTATGGAATGTGAGAGATCATGCGTTTTAACAAGACCTAAAGGCTGCACGCATTCTTGTTCAAAATTATGCCATCCTAGTCCGTGTGAGCCATGTAAACAATTGGTGAAAATTTCTTGCCATTGTGGAATTAATACTGTGTATATAAGGTGTAACCAACTCACTTCTGCTACAGCAGTTCAAAGAAATGAGCTATTAGAATGTGGAAATCAGTGTCCTCGAAATTATCCCTGTGGACATAGATGTATTGACAACTGCCACCCTGGAGTATGTCAAAACGCTGAAGCTTGCAGTAAAAAAGTTAAAATCACATGCACTTGTAAACGCATGAAAAAAGATTTTCCTTGTTATACAGTTCAAGGTAAAAAAGCTTTTGTAGCGTGTGATGAATTATGCCAAAGACAACAGGAGAAGTTAGAAAGAATAAGAAAACTTGATTTGGAAAAAAAGCAGAAGGAAGAAGAACTAAAAAATCTCAAGGAAATTCAAATGTTTGAACAAAAATTTAAACCCAAACGAAGAGGAAAAGAGCGCCACCCTCCAAAGGAATTGTTAAATCATAGAACTGGTTCGTACAAATTAGTATGGATGTTTAGTGGACTTGCAGTTGGTATATCTGTTATAGTAATGTTGACTATGCAAACCAACTTTTAA
- Protein Sequence
- MKKFRRIQAQNQASIARHLEVQKSIINIESSSSEDENEQVLETAVEKVLSSYECDGGDVTKTSTYLTEKFQTGGAVCLICISTVKKTHAIWSCEKCFTFIHLPCIQHWIRDSLSYKHEKGILPLWGCPKCRNEYKEDQIPQKYICFCGKAEDPLYQPWSIPHSCGEMCGKFLQPKCGHKCMLLCHPGPCPPCPKMVSITCFCGKQTPCPRRCNAKEWSCGIICNKKFNTCEHKCIEICHLEPCSPCSEKVLTMCNCRNESQLRNCNELFWQCKKLCGRSYSCNVHFCDKFCHKAGDCNNCPLEFNRTCPCGKKTYAISCKQQQVPTCGDTCGKLSDCGVHYCNMRCHTENCGQCSEVVRKTCRCGTFSKELLCTKEFHCNRKCPQMRLCGRHPCNKKCCDCLINNTFKACEKICDNTLNCRKHKCSAPCHSGPCYPCPRTIVIQCRCGNSKISIPCGTVKKIKPPSCKKLCKIPPDCHHLKRESHKCHQGGCPPCHKICKLVNKRCGHTCEAICHTKVWTKVNPNRTMKPIGPWENKKEKWEYQTFPCPPCKLSVMVTCLGGHETIPWPCFKAVSSSCLRECSQLLTCTNHYCEKICHKLNSMNDINDENKCMECERSCVLTRPKGCTHSCSKLCHPSPCEPCKQLVKISCHCGINTVYIRCNQLTSATAVQRNELLECGNQCPRNYPCGHRCIDNCHPGVCQNAEACSKKVKITCTCKRMKKDFPCYTVQGKKAFVACDELCQRQQEKLERIRKLDLEKKQKEEELKNLKEIQMFEQKFKPKRRGKERHPPKELLNHRTGSYKLVWMFSGLAVGISVIVMLTMQTNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -