Abak000973.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000002.1:7597186-7600697[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0014 0.1 12.9 3.7 1 23 178 201 178 201 0.94 2 11 3.4 2.4e+02 2.3 3.8 1 23 415 437 415 437 0.97 3 11 0.0094 0.68 10.3 0.5 5 20 531 546 529 548 0.91 4 11 0.0005 0.036 14.3 2.0 1 22 717 738 717 741 0.91 5 11 0.019 1.4 9.3 0.5 6 23 749 767 749 767 0.98 6 11 0.81 58 4.2 1.6 2 20 772 790 771 792 0.89 7 11 1.8 1.3e+02 3.2 8.0 1 23 836 859 836 859 0.90 8 11 5.8e-06 0.00041 20.4 2.9 1 23 888 911 888 911 0.96 9 11 0.11 8.1 6.9 3.0 2 23 920 940 919 940 0.95 10 11 0.16 11 6.5 2.0 2 14 945 957 945 961 0.82 11 11 6.2 4.4e+02 1.5 0.4 2 19 977 994 976 994 0.79
Sequence Information
- Coding Sequence
- ATGGAGGAGAAAGATGTACCCGGTGAATTGGGTTTGACTATAACCAGGACCTTCTCCGTGGCTGCCGAGGAAGATGACGCCGGACACGAGATCGTCGTCAAACAAGAGCCTCCGGATGTGTTGCTACCACCCGAGGTTATGGAACACGAGGAAGAGGAAGACGTTGACGAAAAATTGTTTCCCGCACAGGTCTTTCCCGAAGACTCGGAGTTTGTCATGCAGAGAGCTGTCTCGCCGCCGACTTATGTCGATCCTAGCGAACAAAGGTTACAAGAACTTATAATGTTTTATAAGGTAAAGTATCGACTACCAGATGTAACCGTGGCGATAGAGAATTGTGATAAGATCTGGAATACTATGCAGATGATAAAAAATCTCCAAGGTTTTGTACAAGAAGATAGTTCTGATAGTTTGCCAAAGACCTCAATGACTAATGAAGAACCAAAGTTGATACCGTATCAACTGAACTTAGGAAATAACAATAAAGCTCTGCCTGATTTCAGATTTTCTGTGAAGAGTAAAAAGAGGTTGTATCATTGTGTGACATGTGGAAAAGAATTTGTTGATAATCAACATTTACATCAGCATGCGATGCAAGAACACGGGATTTATGTCAGTCCAAAGAGGATTTACAAACCAAGAGCTGACATGAGTGCCAAAGTAGCAGCGTCAACAGCAACTAGTAACTCTAAAATTAAAATTAACAGTGAGGAGGAAATTGCTAGTCCAGTAGCAATAGTAGCTCCACAAATACAGACAATAATACCAGTGCAAGCTATGCAAGTTATAGAAACTATGAATGAACCTTTGGAGCCAATGACTGTGGATGACACTATAGCAAGAGATACTGCTGCTATCAATGAAGTCAAAAGTGATGAACTTGTGGCAAAAGTACATTCTGCAAAAGAAAAAATAAAATGTATACTTTGCAAACGTGTTTGTACAGATATTGTCTATCATATGAAAGGATATCATAAAGTTGGTTGTGTAAATTCGATAATTTCTCAATGTAAAATAGTAGTAGATAGCCCTAATACTCAAACAGAAGAATCAGACGCAAAGCAAGTTCAATATTCAAAAAATACAAGTGTGTCTGAATCTGTTGTGATAGATATAAATGAATCTCTCGTGGTTGCTGTTAAAAAAAGAAAGCGCAATCAACCTCGTTGGACTATTCCAAAAAAGAAGAAGTATAAGAGTAATTATGACAACTTACCTGTACAGAATTTCACAAAAGGTCCTTTTAAATGCCTTATATGTTTAGGTATGTACAAAACAGTAAAAAGCTTTAGTCACCATAAAAAACTTCACAGAATAAGAGGTGAAACAGTTGAAAACTTTGATCCATCCAAATGCAGATTTTTAAATTCACCACTTAGATCAGTTAAAGATACACAGTTGCCTGTAGAAGAAGTAGCAAATTCAGTTCCTACATGCAGTGAATCTTCAAAAATACAGTCAACGATAAGTGAACAAATAGCAGTACCATCAGAGACTGTAAAGTCTGCATTATTAAATGAAGATACAAATAACTCTGAATGTTCAAGTATGGATACAGATAACGATAATCCAGCAGAGCGACCTACTTGTGAATGCGGAAGATCTTTTAGAAGTTCGTATACATTGTTTTTGCACAGAGCAAAATGTAAAAGATCTACAAAAGGATCCAATGACATAGAATCTGGTCTTGGTATAAGTATAAAAATTAAGAAGAATAAGAATGATTCTTACGAAGTTGTTCCAAGAAACATACCAATTGAAGAATCTTACAAAGAGCCTAGCAAGGATAGCGATGCTTCGTCAAATGATTCTGGAATGGCTTCTGTTGATTTTAACAATCAAAGAGTAAGCATGTCAGAGCCTCAATTTACCAATAAAACTCATAGTTTTTTAAGAATTCAAATAGCAGAGGATGACGAAGAAGTGGATATTGAAGATGAAAGTTCAAATCACAGTAATTTGACTAACGTGGTTACAAATTTGGTTGACCCTCCCAGTAGATCAGATACATTAGATCTGGTAACTGCAAATCCAGCTCAAAAAGGGAAATCTGAAAAATTTTCTGCTGAAATAAATTATACTGTACCATCTTTAATAAGCCTGTGCCAAAAAGTATTAAATAATGTACAAGAACTAGATTCATCTGCGTACAGATGTGAAACTTGCAAAACTTACTTCAAGACTAAAACAGAATTGATGGCTCATGCAAAGAAGATGAATCATGATGTTAAAAATCACTGTCCATGTGGTAAAGATTTCAAGAATTTAAAGTATTATAATATGCACGTGAGAAGGTATCATCCAGCATTATTGAAGTGCAGTTACTGCAAGACTAATTTTGGTAGGATCGAAAAGTATATGGAACACGAATGTAACGTAATTGAAGGACCATCATTTATCGAACCAATAATTCAAACGGATTGCTTGCAATGCAAAACTTTAGTCGATCTTGGAGAACCGTTTGACAAACACATGAAAACTCACATGGTTGATTCAACGGTAGTTTATCACTGTTATAAATGTGACATGAAATTCAGTCATTCTCATCTGAGAAGAATTCATTTCGATAAAGAACACGGTTTTTCATTGTGTCAAATTTGTGGTAAACTTCTGCGCATAGATTACATTTACAACCATGAAGCGTACCACGATGGATTAGGATATCCGTGTCACACGTGTAGAAAGGCATTTCCGCAAAAGTCACAACTCAAAAAGCACGTTCAAAATACTCACGAACCCCTAGTGAATAAAGTGATGAGCTGTATGGTTTGTTCAAAAAGTCTAAAGTTAAAACATTTGAAAAAACATATGAGCATACATTTGCATGCAGAGGTTTGCAAAAAATGCAACAAATGCTTCAAAAGTGACGAGCAAATGACTTTAGAGGACCATGTGGTATCAGATCATCCTACGGATTACCCTACATTAAAATGTGATACTTGTACTACTGCCTTCATGTCTGACGAAAGGTTTAAAGAACATTGCCAAAGCGGTTCTTGTAAATCTGACGCAAGTAATAAATTCACTCCTGTACAAAATGCAACAAGTAACTAG
- Protein Sequence
- MEEKDVPGELGLTITRTFSVAAEEDDAGHEIVVKQEPPDVLLPPEVMEHEEEEDVDEKLFPAQVFPEDSEFVMQRAVSPPTYVDPSEQRLQELIMFYKVKYRLPDVTVAIENCDKIWNTMQMIKNLQGFVQEDSSDSLPKTSMTNEEPKLIPYQLNLGNNNKALPDFRFSVKSKKRLYHCVTCGKEFVDNQHLHQHAMQEHGIYVSPKRIYKPRADMSAKVAASTATSNSKIKINSEEEIASPVAIVAPQIQTIIPVQAMQVIETMNEPLEPMTVDDTIARDTAAINEVKSDELVAKVHSAKEKIKCILCKRVCTDIVYHMKGYHKVGCVNSIISQCKIVVDSPNTQTEESDAKQVQYSKNTSVSESVVIDINESLVVAVKKRKRNQPRWTIPKKKKYKSNYDNLPVQNFTKGPFKCLICLGMYKTVKSFSHHKKLHRIRGETVENFDPSKCRFLNSPLRSVKDTQLPVEEVANSVPTCSESSKIQSTISEQIAVPSETVKSALLNEDTNNSECSSMDTDNDNPAERPTCECGRSFRSSYTLFLHRAKCKRSTKGSNDIESGLGISIKIKKNKNDSYEVVPRNIPIEESYKEPSKDSDASSNDSGMASVDFNNQRVSMSEPQFTNKTHSFLRIQIAEDDEEVDIEDESSNHSNLTNVVTNLVDPPSRSDTLDLVTANPAQKGKSEKFSAEINYTVPSLISLCQKVLNNVQELDSSAYRCETCKTYFKTKTELMAHAKKMNHDVKNHCPCGKDFKNLKYYNMHVRRYHPALLKCSYCKTNFGRIEKYMEHECNVIEGPSFIEPIIQTDCLQCKTLVDLGEPFDKHMKTHMVDSTVVYHCYKCDMKFSHSHLRRIHFDKEHGFSLCQICGKLLRIDYIYNHEAYHDGLGYPCHTCRKAFPQKSQLKKHVQNTHEPLVNKVMSCMVCSKSLKLKHLKKHMSIHLHAEVCKKCNKCFKSDEQMTLEDHVVSDHPTDYPTLKCDTCTTAFMSDERFKEHCQSGSCKSDASNKFTPVQNATSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -