Abak004189.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000001.1:17591904-17594228[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.1 78 3.8 0.5 1 23 58 81 58 81 0.92 2 16 0.99 71 4.0 1.6 2 23 229 251 229 251 0.95 3 16 0.88 63 4.1 4.2 3 23 283 304 281 304 0.90 4 16 2.4 1.7e+02 2.7 0.2 2 23 330 352 330 352 0.81 5 16 4.2 3e+02 2.0 0.2 1 23 375 398 375 398 0.74 6 16 0.14 10 6.6 6.1 1 23 413 436 413 436 0.94 7 16 0.18 13 6.3 1.6 1 23 446 469 446 469 0.96 8 16 2 1.5e+02 3.0 0.7 2 23 484 505 483 505 0.83 9 16 0.0016 0.11 12.8 1.5 1 23 518 541 518 541 0.98 10 16 0.017 1.2 9.5 1.6 1 23 559 582 559 582 0.96 11 16 0.00012 0.0086 16.3 1.8 1 23 588 611 588 611 0.95 12 16 0.00033 0.024 14.9 1.2 3 23 618 639 616 639 0.93 13 16 0.0028 0.2 12.0 1.7 1 23 644 667 644 667 0.97 14 16 7.1e-07 5.1e-05 23.3 0.3 2 23 674 695 674 695 0.97 15 16 3.2e-05 0.0023 18.1 0.8 1 23 701 723 701 723 0.98 16 16 3.1e-05 0.0022 18.1 2.1 1 23 729 751 729 751 0.97
Sequence Information
- Coding Sequence
- ATGGGTAAGCTTAACAGGCTTTTGTCCGTCGCCACACCAATGGTCCAGGTTAAAATCGAGCCGTCCGAACCGCATAATTCCGGTGACTTCGAGGAAGTTACCATCGATGGAACTAGTTCTGAAAACACAGAAGCGATGTCTTTGGCAAATAAGACCAATGACATCGTAGTATACATGTGCAAAGCCTGTAAAATGTACTTTCCTCTGCGACAAATGCTCGAGATTCACAATACCAAAGTCCATCAATCTCAGAAAAGATCACTTCTCAAAGCGAACGAGAGCAAGCAGCAGGCTGCAAGTCCTTCACCAACGAAAAAACAGAAGACTATACCGGCGTCGCTTGCAAATGTCGTTGAACCTACGGATGAAGAACACGACAGGATATATTTCACGGGTTACTACAAGAATTCCAGTGGCGAATACGTCTGCAACTGCTGTGACTTCAGTTCCCGCATCCGTTCGACTGTCGCGTCGCACGCTGCCAAGCGGCATAATTCCCTTGGCTTCGAAGACTTTGAAAAATCCGAAGTTTGTCCTGATCCTTCTAACGAGGAAGAGCCGAAGGTCGAGCCGGTCGAAGAGGACGACGAGGACAGTTGGCCGGTGGAAGTAGTCGAAGAAGTCGACGAAGAAGAAACCGAAGAAGTAACCAAGACGGAAGCTTCGTTCGACAAGAAGAGTCGTTCCTGTCCATATTGTTCGTTCGTCTCAAGCATCGGCTCGACCTATCACTCGCACATAAAGCGCAAGCATCGCGAGCAGTGGCTCAAGTCCGTCGCTCAGAAGGTCGCCGCGCTCAAAACGACTCCGTCTTCTTTGATGGGACCAAGTGGTAACCAGCTCGCCTGTACACATTGTTCTTTCAAGAGCTTCAAACGCTCAACGATGCGCTCGCATATTTTGCGTAAGCACGAGAAGGGAGATCCACCGACCATCGACCCCGAGTTCGAGGACATGAAAGCCCAAACCGAAGGCAAAAAAGTGCGCAAGTGTCCTTACTGCCCGTATGAGTCCTGGATCTACTCGACGATGAATTCGCACATCAACCGAACTCACGGTGACCAACCCCATCCGCTCATCTCAAAGTCCAAGCCGCGATACAATGCTCAACTGTACACAGGATACGCGTGTCACTATTGCACCTTCGCCGCAGCCACTGTTCCCAGCATCCGTTCGCATGCTGCCAGAGAACATACCGGTCGGAAGCAACCACTCCAACAAGTACCCGTTCAGGAGTTCGACTGCGATCAATGCGATTACAAGACCAAGAGTCGAAGACACATGCAGTTGCACCTCAAGGATTGTCATACCACGTTAGCCAATGAGGAAGGTATGTTCCAGTGTCACGCCTGTTCTTACGAGACACAATCACGGATGGGTCTGCAGAGGCACGTGTCGATCAAGCACGGCTTGATTCCCAACAAGAACATCTCGGACAGCGCGTACATAAAGTGCGAGTACTGCGATTACAAGACACTGAACGCAAAACTCATGGATTGGCACAAAAAGCAGCACAGCACGGACAACAACGACGAGAACGATGGGAACAGCTATGAATGCAATGACTGCGACTTCTCTACCTGGACAAAGAATCAGTTATACCAGCACATCAGGAGGAAGCACAAGGACTGCGAGGGTAACGAAAAAGAGCCAGAACTCGAACCTGAGCAGTACTACGCTTGTGGGCAGTGCGACTACATATCGAAGAACAAGCACGCGATGAAAACTCACGTGCTTAGGAAGCACACCGACGATTACCCACACGAGTGTGATCTTTGTGAAAAAAAGTACAAGGTCAAAGCTGACCTGACAAACCACATCAGGTTCCAACATCGAGAGCAGCCAATAATCTGCGACGTCTGCGGTAAAACCTGTCGAAACAGCAATCTATTGTACCTGCACCAGAAATTCGCTCACTACAAACCGGACTTCGAGTGCCACATTTGTCACCGACGGATGGTTAGCCAAGCGAATCTGGACGACCATATCATCAAGCAGCACGAACAAGTAGAAGCTGCCGTGTGCGAGGAGTGTGGCAAGACTTTCAGGAAAGCTGCTCGATTGAAGATTCACATGCGAGTTCACACCGGTGTCAAGCCATACACGTGTAAAATTTGTATGAAATCATTCGCCAGGAGAAATGGTTTGAGACAGCATCTTTTAATACACACTGGTAAACGGCCGTACATTTGTGACATATGTGGGAAAAGCTTCACGCAAAAGACTGGACTAATTTGTCATAGGAAAATGCATCCTGGAGATAAACCACCACTGCCTAGAGTCACCATCGAACATGTTCTTACAGATCTGTTGAAAGAGTCATAG
- Protein Sequence
- MGKLNRLLSVATPMVQVKIEPSEPHNSGDFEEVTIDGTSSENTEAMSLANKTNDIVVYMCKACKMYFPLRQMLEIHNTKVHQSQKRSLLKANESKQQAASPSPTKKQKTIPASLANVVEPTDEEHDRIYFTGYYKNSSGEYVCNCCDFSSRIRSTVASHAAKRHNSLGFEDFEKSEVCPDPSNEEEPKVEPVEEDDEDSWPVEVVEEVDEEETEEVTKTEASFDKKSRSCPYCSFVSSIGSTYHSHIKRKHREQWLKSVAQKVAALKTTPSSLMGPSGNQLACTHCSFKSFKRSTMRSHILRKHEKGDPPTIDPEFEDMKAQTEGKKVRKCPYCPYESWIYSTMNSHINRTHGDQPHPLISKSKPRYNAQLYTGYACHYCTFAAATVPSIRSHAAREHTGRKQPLQQVPVQEFDCDQCDYKTKSRRHMQLHLKDCHTTLANEEGMFQCHACSYETQSRMGLQRHVSIKHGLIPNKNISDSAYIKCEYCDYKTLNAKLMDWHKKQHSTDNNDENDGNSYECNDCDFSTWTKNQLYQHIRRKHKDCEGNEKEPELEPEQYYACGQCDYISKNKHAMKTHVLRKHTDDYPHECDLCEKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPDFECHICHRRMVSQANLDDHIIKQHEQVEAAVCEECGKTFRKAARLKIHMRVHTGVKPYTCKICMKSFARRNGLRQHLLIHTGKRPYICDICGKSFTQKTGLICHRKMHPGDKPPLPRVTIEHVLTDLLKES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -