Basic Information

Insect: Apocrypta bakeri
Gene Symbol: -
Assembly: GCA_018906985.1
Location: JACCIA010000002.1:11293209-11297838[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.94 68 4.0 3.4 1 23 346 368 346 368 0.97

2 19 0.00041 0.03 14.6 0.3 1 23 417 439 417 439 0.98

3 19 0.011 0.82 10.0 0.5 1 20 496 515 496 517 0.94

4 19 0.024 1.7 9.1 3.3 2 23 558 579 557 579 0.97

5 19 0.0039 0.28 11.5 0.4 1 23 626 648 626 648 0.97

6 19 0.00032 0.023 14.9 0.1 1 23 654 676 654 676 0.98

7 19 0.0015 0.11 12.8 4.0 2 23 716 738 715 738 0.90

8 19 0.92 66 4.0 0.7 2 23 747 769 746 769 0.91

9 19 0.00011 0.008 16.4 1.2 2 19 803 820 802 825 0.89

10 19 4.6e-05 0.0033 17.6 0.3 1 23 860 882 860 882 0.93

11 19 7.6 5.5e+02 1.2 0.0 2 20 939 957 938 957 0.86

12 19 0.00091 0.066 13.5 0.1 2 23 976 997 975 997 0.97

13 19 0.0029 0.21 11.9 5.0 1 23 1021 1043 1021 1043 0.97

14 19 0.015 1.1 9.6 4.7 1 21 1062 1082 1062 1086 0.88

15 19 0.034 2.4 8.6 0.6 2 23 1145 1167 1144 1167 0.93

16 19 0.013 0.94 9.9 2.9 3 23 1196 1217 1194 1217 0.89

17 19 0.0025 0.18 12.1 0.3 1 23 1224 1248 1224 1248 0.91

18 19 0.073 5.2 7.5 0.8 1 23 1253 1276 1253 1276 0.94

19 19 0.03 2.2 8.7 0.6 3 23 1308 1329 1306 1329 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.94	68	4.0	3.4	1	23	346	368	346	368	0.97
2	19	0.00041	0.03	14.6	0.3	1	23	417	439	417	439	0.98
3	19	0.011	0.82	10.0	0.5	1	20	496	515	496	517	0.94
4	19	0.024	1.7	9.1	3.3	2	23	558	579	557	579	0.97
5	19	0.0039	0.28	11.5	0.4	1	23	626	648	626	648	0.97
6	19	0.00032	0.023	14.9	0.1	1	23	654	676	654	676	0.98
7	19	0.0015	0.11	12.8	4.0	2	23	716	738	715	738	0.90
8	19	0.92	66	4.0	0.7	2	23	747	769	746	769	0.91
9	19	0.00011	0.008	16.4	1.2	2	19	803	820	802	825	0.89
10	19	4.6e-05	0.0033	17.6	0.3	1	23	860	882	860	882	0.93
11	19	7.6	5.5e+02	1.2	0.0	2	20	939	957	938	957	0.86
12	19	0.00091	0.066	13.5	0.1	2	23	976	997	975	997	0.97
13	19	0.0029	0.21	11.9	5.0	1	23	1021	1043	1021	1043	0.97
14	19	0.015	1.1	9.6	4.7	1	21	1062	1082	1062	1086	0.88
15	19	0.034	2.4	8.6	0.6	2	23	1145	1167	1144	1167	0.93
16	19	0.013	0.94	9.9	2.9	3	23	1196	1217	1194	1217	0.89
17	19	0.0025	0.18	12.1	0.3	1	23	1224	1248	1224	1248	0.91
18	19	0.073	5.2	7.5	0.8	1	23	1253	1276	1253	1276	0.94
19	19	0.03	2.2	8.7	0.6	3	23	1308	1329	1306	1329	0.94

Sequence Information

Coding Sequence: ATGATGGAGGACGTCGTCGAGGTGAACAACCTGATGGAGAACGCTTGTCGACTCTGCCTGACCACCGAGCAAACGAGGTCCTCGATATTTGGCGTGCCGCACGTCTCTGTGCCCTTCGCCGAGAAGATTCGCGCTTGTTTATCCATACAGGTTACTTCCAATGATAAACTATCTACGCTGGTATGTACAACTTGCATAAAAAATATCAACCAATGGCATACATACAAGGATACGTGCTTGCGATCCCAAGAAAAACTCCAACAATGGCTAATATCAAAGCAAAACACTGCCGTAGCCCCAATGGTGACTATAAAAGAGGAGCCAATGGATGAATCGGTTCCAAATAATATGAATAGTGAAGATAATGCTACCGATCAGGCTCTACAAAATGGTATGGATGTTGAGACTGCAACTAACTCTACAAATTCCATAGCTCCTGTAGCTCAGGCCTCAGAATTAGAGAAACCATCAGATGACAGTGATATCGATAAAGAAATAGTTCCAGAGGTACAAATCAAAACGGAACCATTAGATACAGAAGATGAGGATGATTGTAATGTGGATGTAGAATCTGTGAATAGTGGAGAACTTTTAATTAATCCAATGGCAGTAGCTGCTAATAATGCAAACACTGACAGGAAAATGGAAGCAGATTCCACGCAAAAATTTAATGCAAGAAGGTATGCATCGCGAAAAAAATTGCGACGTGGACCTCATACACACTTTAGAGGATCCAAATTATTCAAGAAAAAATGCATTCATTGTAAAATTAACTTGCATTCAAAATATTCGTTCTTCCAACATATGTCTCGATACCATGGTATTATCAATAACTTAGAGCCAAATGAAATTGTCAAGGTCGTGACTCAACCTCCGGTAAAGAAGCAGAAGTCTAAACTTTCTGAGCATCTAGATAATGCAGATGTCTCTACTGAAATACAAGATAGTAATCCCGAAGATGCAGAATTTGAGCAAATGATCAAAACTGAACCTCTAACACCGGTGCAAAAGAACATCATAGGTCAGCTGAAGACTTTCTCCTGTTACTCGTGCAAAGAAACCTTTTTCGATAGAAGACGTACTTTAAATCATATAAGGCAACACATGCCTGATTTACGGCCCTACACTTGTATCGCTTGCCTTACTAAATTCTCTGATAGAGCTATGTACAAACTTCATTGTAGTGCATCCTTTGAATGTGCTATGAAGATCGCTCTTGTTGTGCCTAAGGGAGGCAATGAAAAATACTTTACATGCAATATGTGTCTCCGACCCTTTGCTAATCGAAGGGAGTTATTAAGTCACTTAGCTATGCACGCTGATAAACAACATCAACAACTAGAAGAACAACCTTTAAGGTCTGCACCAAAACTTAATCCTATAGTTATGCCTTCATTAACTCCGGCATCGGAGTCTTCGCCTTCCAAACGTTCCATTACAAATAAGATTGCAGGACCATACATGAATGGTGATCCAGCACACAATCATACTTGTGACCTGTGTGGTATGATCTATAGGTACAAACCTAACATGTTCAAACATCGTGAACTCTGTTCTTCTTTAGCGGAAAATATTCGCACATCCTACAGGTGCATTCACTGTAACATGACTTACCTTGTTTACAAAAAGTTCTACTCGCATGTAATCAGCGACCACAAAAAACGCGAGGTCACTTGTTTTACCTGCCATGCGAAATTCACTACAGCCGATGAATACCTTTCTCATCACGAAACTCACCGAGTCTTCTCAAAAGACAAGGAAAACATCAATGAAGGCACCAATGAGCAGCAACGCCAACAGCAAGTGGAGAAAGACAATGCATTTACGGATGATTCGAATTCTTTGGGGGATCCTTTAGATGCCAGTGAAAAACCATTTAACTGCGCTCTTTGTAGCGAACGATTTGCAACAAAACTTGAACTGACGGAGCATCGCAATCTGCATCTAAAGGTAAAGATCTATTCGTGCGTAATATGTCGCAGCATGTTTAGTAGCTCTGGAGCTCTTGAGATTCACATGAAGGAGCATGGGATCGATGATGCAGCCGAGCAGAATGCTAATAGTTCGTGTATCGAGTACAATTCTCAGGGCAATATGAATGAGTCGTCTATGTCAGCTACGTCTGATCCAGGAGGAAAATTCCACCATTGTTACCCGTGCGGTAAGAATTTTTCAAATTATGCAAATTTAAAGAGACACGAGAGAAATCTTCATGTCAAAAATATGAAGCGTCGCTGGAGCTGCGATGCCTGTAAACGACGTTTTAAGTCAGCCCAAGATCACGATGAGCATATAATGACTGCTCATGGAATGCATCCGTCTCAAATAACACAGCAATCTTCGGTAGCTCAACCACTGATTCTACCACAGCCCCAGTTTTCTGCTACAACTGGCAAGCCATTGATGCAATGTCCTAAATGTCCGAAGACTTTTACTTACCAAGGAAATCTGATTCTTCATTGTCAAAATGTTCATAAAGAAAATCATTTCGAAATGGCACAACCGAGTACGGCTACAACGCGACACTCAGCTCCACCAGCTCCTCGACGTGCATTGCCTGTGGTAACATCGCGTGGTTACGCTTGTGATATTTGCGGTAAAACCTTCCGTGAAGAACAATCTCTTAAGACGCACCGTGGCTGGCATTTGCGTTCCAACTATCGATTGAAAGTCGACCAAAATGCCAGTCTCAAAGAGACAACTACAAGCAGTCCTGGGTATACGGTAACGACGGCTGTACCTAAACCAGCTAAGGCAAGAAAGTCTTTCCCAAATAATCCATCCCAGAAGCAGTTAAATGCTCTTTCGAGCTTGCAATGTCAGGTTTGCGACGATCGCTTTGCTGATGTTGAGATATTACGAAAACATCTTTGGGACGTGCATTGTGCTCGTAACAAGCCAGAGAAAACCTTTGCTACGGATTTGCAGTGTGAACTCTGCACTAACAAGTTCCCGAACGAAGAGGCTTTAGAAAATCATATGAAGTGGCATTCACAGAATCCGATTCTTAGTACACCGTTAAATAACAGAGTATCAGTTTCTGAAGTTCCTAAAAAGAGTTTCTGTTGCGAAGTTTGCGGAAAATACTATAGTAATCGTAAACTTTTCTTGCGTCATAAGAAATTGCATAAGGTCGTACCAGCTTCTACCGTAATGAACCTACATTCGTTGCAGACCAAACGCCATTTTTGCCATGCTTGCCAAAAAACCTTTGCGACTGAAGCTTCGCTACGTCGACACAAAGCTTCCCCTTGTCATCAAAACAATGCACGGTTACAAGTGCAGGCTTCAAAGAAAATTACGACGACGGCTTTGGTACACCATCCACCGCCGGATTCTGTGACTGAAATTAAAGATGAGCCTCCTGAGGTAGACTACTCTAATATACCAACGCATGGTGCTCATGGACAGCTTTTGAAAAAAAGGCCAGTAACCTGCCATATTTGTAAGATGATTTTCCCGAATATGAGTGTACTTTATCAGCATAAGCAGCTTGCTCACAAACAATCAGCTACTCCAAGTAAAAGTCCGGCTCCACAAACGAAAGATTGCGTGCCGCTTGTTAGTAGTCAGGGTCTCGTTTGTTGTAACCTTTGCGGTAAACAATTCCCCGGAATTTCAAATCTGAAGCAACATTTTGCCCACAAGCATAAGACAAAGGGCGCCTCATTTCCCTGTTATGCTGAAAGTTGCAACTTGGTTTTCAGTAGTCTCAGTTCGTTAAAGAACCATGAAACGACGCATTCAAGTATGATCTTCAATTGTCTATTATGTGACAGACACGTATTCTCCAGGGCTGCTATGACAAAGCACATGCTGGCCATGCACAAGGCCCTTTACCAATCTGGAACTAACAAAAATAATCTTTGGACTGAGACAGATCTGACTAATTATCATATAAAGAATTGCCAGAGCACAGCTTGTCCCAAGTGTAAAGTGAAGTATCCCAACTTGCGAGCACTGAAAATTCACTATTTCAAGTTTCATGAAAATAAGTCATAG
Protein Sequence: MMEDVVEVNNLMENACRLCLTTEQTRSSIFGVPHVSVPFAEKIRACLSIQVTSNDKLSTLVCTTCIKNINQWHTYKDTCLRSQEKLQQWLISKQNTAVAPMVTIKEEPMDESVPNNMNSEDNATDQALQNGMDVETATNSTNSIAPVAQASELEKPSDDSDIDKEIVPEVQIKTEPLDTEDEDDCNVDVESVNSGELLINPMAVAANNANTDRKMEADSTQKFNARRYASRKKLRRGPHTHFRGSKLFKKKCIHCKINLHSKYSFFQHMSRYHGIINNLEPNEIVKVVTQPPVKKQKSKLSEHLDNADVSTEIQDSNPEDAEFEQMIKTEPLTPVQKNIIGQLKTFSCYSCKETFFDRRRTLNHIRQHMPDLRPYTCIACLTKFSDRAMYKLHCSASFECAMKIALVVPKGGNEKYFTCNMCLRPFANRRELLSHLAMHADKQHQQLEEQPLRSAPKLNPIVMPSLTPASESSPSKRSITNKIAGPYMNGDPAHNHTCDLCGMIYRYKPNMFKHRELCSSLAENIRTSYRCIHCNMTYLVYKKFYSHVISDHKKREVTCFTCHAKFTTADEYLSHHETHRVFSKDKENINEGTNEQQRQQQVEKDNAFTDDSNSLGDPLDASEKPFNCALCSERFATKLELTEHRNLHLKVKIYSCVICRSMFSSSGALEIHMKEHGIDDAAEQNANSSCIEYNSQGNMNESSMSATSDPGGKFHHCYPCGKNFSNYANLKRHERNLHVKNMKRRWSCDACKRRFKSAQDHDEHIMTAHGMHPSQITQQSSVAQPLILPQPQFSATTGKPLMQCPKCPKTFTYQGNLILHCQNVHKENHFEMAQPSTATTRHSAPPAPRRALPVVTSRGYACDICGKTFREEQSLKTHRGWHLRSNYRLKVDQNASLKETTTSSPGYTVTTAVPKPAKARKSFPNNPSQKQLNALSSLQCQVCDDRFADVEILRKHLWDVHCARNKPEKTFATDLQCELCTNKFPNEEALENHMKWHSQNPILSTPLNNRVSVSEVPKKSFCCEVCGKYYSNRKLFLRHKKLHKVVPASTVMNLHSLQTKRHFCHACQKTFATEASLRRHKASPCHQNNARLQVQASKKITTTALVHHPPPDSVTEIKDEPPEVDYSNIPTHGAHGQLLKKRPVTCHICKMIFPNMSVLYQHKQLAHKQSATPSKSPAPQTKDCVPLVSSQGLVCCNLCGKQFPGISNLKQHFAHKHKTKGASFPCYAESCNLVFSSLSSLKNHETTHSSMIFNCLLCDRHVFSRAAMTKHMLAMHKALYQSGTNKNNLWTETDLTNYHIKNCQSTACPKCKVKYPNLRALKIHYFKFHENKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00286670;
90% Identity: -
80% Identity: -