Abak004363.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000001.1:20531268-20534909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0083 0.59 10.5 0.2 1 20 133 152 133 153 0.96 2 13 0.0099 0.72 10.2 4.6 2 23 277 299 277 299 0.91 3 13 2e-05 0.0015 18.7 1.0 2 23 359 381 358 381 0.95 4 13 7 5e+02 1.3 7.4 3 23 472 493 471 493 0.86 5 13 0.03 2.1 8.7 0.7 1 23 542 565 542 565 0.94 6 13 0.0006 0.043 14.1 0.0 3 23 614 635 613 635 0.90 7 13 0.00026 0.019 15.2 0.1 3 23 671 692 669 692 0.93 8 13 0.008 0.57 10.5 3.7 2 23 735 757 734 757 0.96 9 13 0.028 2 8.8 2.7 3 23 772 793 770 793 0.94 10 13 1.5e-05 0.0011 19.1 0.2 2 23 838 860 838 860 0.94 11 13 7.8 5.6e+02 1.1 2.3 1 23 945 969 945 969 0.96 12 13 0.00016 0.012 15.9 0.0 2 23 986 1008 985 1008 0.95 13 13 0.011 0.8 10.1 0.5 1 23 1086 1109 1086 1109 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCGAGCCAAGAGACAACGTCACCGCCGCCGTCGTCGACGAGCATAACGACGTGTCTGCAAGCAGAGTCGACGACGGAGATCGATAGCGAGGGTTCGAGCTGCGAGGAACGAGGCGAGTCGCGGCGCCGGTTACCGAGCGATCTCGATGCCGGTATTCCAAAGAAACGTCGGAAGCAGTCTACACCCATCAAATTCTCCACGACTTCGCTCACCCCGACTTCGGGCGATGTAGTTGCTCCCGATACGGAGTACGAAGATGAGGCCAGCAGTAATCAACAGCTGGACTACTCTACAGAGGAAGGTAAGCCATCGATCGACTCGCCGCACTCTAAATCCATCCAAGGCCAGCTGCAGCAGCACCTCATCAAAGACGAGAACCTGAATAATGAATTTCGCTGCCAGTACTGTAGTCAATTTTTCGGTAGTCGCGGCGCCCTTGAGCTTCATCTCGAGTGCGAACATAACGTTATTCAGCGAGAGACGATCTCGGCAAGGTCCAGTCCGGAAACGAGTAGTAGTGCTCAGCCTTCCGCGGATCAGTCTGTCAGTCCGATGAATTTGTCCGGTATTAGTATTAGGAACTTTGCGACAAGTAGCGCCTGGCTCTCGGGACAGAGCCAGATGCAGCAGGAGGCTTCTCTCGCGGCGACCGCTGCGAAGCTTCAAGCTGTCAGGAATAATAATCACTTTCAGCAGATTCCTGCTGGCTTCCCCGGACCCTTAGCTCAGTTTTTGGCCATGCCCGGTTTTCCCATGCCCGACTCCACGCAGATTCAGCGGGCTACCATGGGGCAGTTTCCCAAAATCTTCAACCCCGATGCCTATTGTGATCTCTGTAACAAGGAATTTTGCAACAAATATTTTCTCAAGACGCACAAGGCTAATAAGCATGGAATCTACGTCGATACACCAAATACTCAGCCTCAGGCTGGAGCTGTTAACGAGGCGACGCCTTCGAGTCCTTTCATCGCTACCTCCAGTCCTATTGGTAATTTGGCAAGTAGCGTGAACCTCAAAGTAATCGATCAGCAGAGACTGGAGAGCAATGGAATGCATCAGCCCAGCATCCCTTGTGACATGTGCTCTAAGCGTTTTAAAAGCGAGGACTCTTTGAGGAAGCATCGACAGAAGGTCCATATTAACCATAACAACGACGGTATGGACCCATCGCAAGTTCACATGAATTTACCATCTTCTTCTGGAGGCGAGGAAGAGAGACAGAGTCCAGGTGGCATGGAAGCTCTATTTAAACAAGAGTACAGCATAGATCAAGACGATTCATCGTTTGCATCTATTCCGAAAGTTAGCAACAATATGTCGCCGCCATCAACTCCTCATCAGATTAAAGACTCAGCAATTAATGGCGAAAGACTGAGACGCCTGGGTGTCATGAATCCCGAGGCTTTCTGTGAAATCTGCTGCAAGGAGTACTGCAATAAGTACTTTTTACGTACGCACAAGCTTAAACGCCACGGCATTTTTATTCCCGACAATGAAAAGCCGCCAAATCCCCCGGCAGGTGCTGCTACCTGGCACCAGGTTCAAACCAGTCCTTTGAACCTCATAATGGCCGACGGTCTAGGCAATGGCTCAGAATCTGGGGACAGAACCGAGGAGTTCGCTTGCAAAACTTGCGGAATAAGATTCCAGACCGAGGGATTGTATCACTTGCACGTCGAAAAGATCCACGATAATGTCGAGCGGTTATCACCAAGACCTGACCAGGATCAGGATTCGATGGACCAACGTACCGATTCTATCTCGGAAGATCTCCAGAAACTGCAAACCATGATTTTGCAACTGAACGGTTTAGAGTCAAACAAGGCAGCATCTTGCGCTCTCTGTGGCAAAGATTACGACACGCCTAGTGCTCTCAGAAGCCATATGGTAGCCGAGCACGGTGTTGTCCCAGAAAATCTAACAACGTCATCACCGCAACAACTGCAGCTACAACAACTCGCAAGAGAAAAATCATCACCCACTGTCTGTATAACTCCGATATTCTGTACCATTTGTGATAGAGAATACCCGAGTCAAGAGGCTCTACGCAAACACATAGCAGAAGATCATCAACCATCAACGCCAACTAGTTCTACGACTCCTCAACTTCCAACCTCGGTACCCACAACTCCGAAGTCCAACTCATCTCAGTCAGAGATACGCAAACCTGTAGCCAACATCACGCCTACGTCTAGTTATTGCGAGATCTGTAACAAGGAACTATGCAACAAATATTTCATGAAAACACACATGCAAAAGATGCATGGCATAGAGATTGAGAATGGCGCCCAAATTGGTGGCGTAATCTGTAACATCTGTAAGAAGGAGCTCTGCAGCAAATACTTCCTGCGGGTCCATAAACAAAACACTCATGGAATAATAGAAGAGGGATCCACTGCGGGTAAGCAGGAGAGCCTCGAACCACCAGCTAATCCAGAAGATCTAGCTCTGAAGCCCGAACAGCTTGGTGATCTGAGTTTGCGCTATATTACCCATTTCACGGAAGTCTGTCCGATTTGTAATCGTCGATTTCGTAGCCCCAAGTGGTTGAAAGTCCATCTTCAGGGAGAACATGGCAAGGCCGGAATAGAAAAGTGGCGCGAGATCGAACAATATCATCAGTCACTGCCAAAAACTCCGTCTGCTCGATCAGCTCCAGGTGCCTCTAAGACTTCTCAACCGCAACAACAGACCAATGCTAATCTCAGGATACCCAACGGTTTTGAACCAAACCCGCAAATTCGAGCTGATCTCGCAGCTCTGAGTAATCAAGTACTCTCCAATTTCTTTGGTGGCGGTACAACCGATGATCAGCAGGGACAAACCTACCGCTGTTCCCAGTTGCACTGCAACTTTTCTACTAACATCTTGCCACTGTTCTTCCTTCACGAACGATCTCACAGCCAGCAAGAAAATTCCTCAAGCAACGACAACGATCGTATTCAGATCCAGTGTCCCATATGTGCCCAAGGCTTTTCTCAACCGGAGATGCTGCGCCAACACATAGCTTCCCGACATCCATTCCCAGGACTGCTGTCCCAGTTTTCAATTCCATTGCTAAATGACTTCGCTCTGGGCAACGACCAACAACAGCAGCAGCAAGTCCAGCTCCACGACTACGAAGCTAAGGAGGAACTACGACAGCCTAGTCCTCAAATTATGAATGAGATCGACACGAACAAAATGAACAAGATCAAACAGGAGGATCAGAACCAGAACCAAGCAGTGCAGGTGATGCCCCAAGGCGCCTACAAATGCGCTCAGTGCGGGTTTGCAACAGCCAATCTAAATCGTATCAAAAAACACATCCGCAAGGACCACAAAAGCCTTGGCGATCCAGCTGAGACAGCTCTTGCCGAACTCAGCAAAACCCTCAAAGACGTGGCTAATAAACACAAAGTCCCAGCTAGTTACGCCATGCCTCAGGACTTGAGTCTAACTCCGGATAAGACCATAATGCAACCCTTCATAATAGAGGAGCTCTGCAACGAAACTCATCACCAGAACAACGGCAACAACGGCTGTGCCAACGACGACAACAATCCAAGGCGATTCGCTCCAGCTCTCGTGTTCCTGCCGGTCAAAGCGAGAGTCAGCGGTAGCCTTACCATGTCTTTTACGCTCAATCCTGCCTGA
- Protein Sequence
- MSSSQETTSPPPSSTSITTCLQAESTTEIDSEGSSCEERGESRRRLPSDLDAGIPKKRRKQSTPIKFSTTSLTPTSGDVVAPDTEYEDEASSNQQLDYSTEEGKPSIDSPHSKSIQGQLQQHLIKDENLNNEFRCQYCSQFFGSRGALELHLECEHNVIQRETISARSSPETSSSAQPSADQSVSPMNLSGISIRNFATSSAWLSGQSQMQQEASLAATAAKLQAVRNNNHFQQIPAGFPGPLAQFLAMPGFPMPDSTQIQRATMGQFPKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDTPNTQPQAGAVNEATPSSPFIATSSPIGNLASSVNLKVIDQQRLESNGMHQPSIPCDMCSKRFKSEDSLRKHRQKVHINHNNDGMDPSQVHMNLPSSSGGEEERQSPGGMEALFKQEYSIDQDDSSFASIPKVSNNMSPPSTPHQIKDSAINGERLRRLGVMNPEAFCEICCKEYCNKYFLRTHKLKRHGIFIPDNEKPPNPPAGAATWHQVQTSPLNLIMADGLGNGSESGDRTEEFACKTCGIRFQTEGLYHLHVEKIHDNVERLSPRPDQDQDSMDQRTDSISEDLQKLQTMILQLNGLESNKAASCALCGKDYDTPSALRSHMVAEHGVVPENLTTSSPQQLQLQQLAREKSSPTVCITPIFCTICDREYPSQEALRKHIAEDHQPSTPTSSTTPQLPTSVPTTPKSNSSQSEIRKPVANITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIIEEGSTAGKQESLEPPANPEDLALKPEQLGDLSLRYITHFTEVCPICNRRFRSPKWLKVHLQGEHGKAGIEKWREIEQYHQSLPKTPSARSAPGASKTSQPQQQTNANLRIPNGFEPNPQIRADLAALSNQVLSNFFGGGTTDDQQGQTYRCSQLHCNFSTNILPLFFLHERSHSQQENSSSNDNDRIQIQCPICAQGFSQPEMLRQHIASRHPFPGLLSQFSIPLLNDFALGNDQQQQQQVQLHDYEAKEELRQPSPQIMNEIDTNKMNKIKQEDQNQNQAVQVMPQGAYKCAQCGFATANLNRIKKHIRKDHKSLGDPAETALAELSKTLKDVANKHKVPASYAMPQDLSLTPDKTIMQPFIIEELCNETHHQNNGNNGCANDDNNPRRFAPALVFLPVKARVSGSLTMSFTLNPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00287528;
- 90% Identity
- -
- 80% Identity
- -