Basic Information

Insect: Apocrypta bakeri
Gene Symbol: -
Assembly: GCA_018906985.1
Location: JACCIA010000001.1:17621252-17623054[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00023 0.017 15.4 0.6 1 20 90 109 90 110 0.95

2 10 0.009 0.65 10.4 1.3 2 21 129 148 128 149 0.94

3 10 5.9e-05 0.0042 17.3 1.1 2 23 186 208 185 208 0.95

4 10 0.0016 0.11 12.8 0.2 2 23 213 235 212 235 0.90

5 10 3.9e-05 0.0028 17.8 0.6 3 23 243 263 242 263 0.96

6 10 6.6e-06 0.00047 20.2 0.8 2 23 271 293 271 293 0.94

7 10 0.54 39 4.8 1.1 1 23 302 324 302 324 0.97

8 10 0.0083 0.6 10.5 0.3 2 23 331 351 330 351 0.96

9 10 0.00011 0.008 16.4 0.4 3 23 359 379 358 379 0.95

10 10 2.7e-06 0.00019 21.5 2.5 1 23 385 408 385 408 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00023	0.017	15.4	0.6	1	20	90	109	90	110	0.95
2	10	0.009	0.65	10.4	1.3	2	21	129	148	128	149	0.94
3	10	5.9e-05	0.0042	17.3	1.1	2	23	186	208	185	208	0.95
4	10	0.0016	0.11	12.8	0.2	2	23	213	235	212	235	0.90
5	10	3.9e-05	0.0028	17.8	0.6	3	23	243	263	242	263	0.96
6	10	6.6e-06	0.00047	20.2	0.8	2	23	271	293	271	293	0.94
7	10	0.54	39	4.8	1.1	1	23	302	324	302	324	0.97
8	10	0.0083	0.6	10.5	0.3	2	23	331	351	330	351	0.96
9	10	0.00011	0.008	16.4	0.4	3	23	359	379	358	379	0.95
10	10	2.7e-06	0.00019	21.5	2.5	1	23	385	408	385	408	0.98

Sequence Information

Coding Sequence: ATGAGAACGAGATGCCGTGTGCCACGGATCCTTCGGCATAAACGATCATCGAACGATGCAACTTCCGATCGAGTGCAAAAAGAGAAATACCAACGAGGTTCTCCAAAAACTGAGAAAAATGCTCTGGCACCAGTTATAAAGTACGTCTATGTTAAACCCTTTGCACAAATGAGTAAAGAATTATCTTTGCCTACACTCAACGTCGCTGACGATTCTCCAAAAAAATCGCAGGCGCCTAAGTCGAAAAAGAGAGTTCGCAGAGAGACTCACAAGTGCGATTCTTGCGATGAATCTTTTAACGATAGATCGTCCTTGATAATTCACAAAACTGAAAAATCGATAGTTCGAACGAGAGAAGCTTTACGCGAACCTCCACTCAAGCTCACTTGTGAGATGTGTAATCGTCAATTTCTCTCGAAAGGTATGCTAACACGGCATCACAGAAATTGTGGAGTTATGAATTCGAATGATAAACCAATTAAGTCTAATCGACGTCGTAATCCTACAAAACCCACGAAGAACAAAGAGAACGAAACAGCGGAGGAAGGTTCAACAAGTTGTCAAAAGTGTGGCAAGGTCTTCAAAAAAGATAAATATCTGAAGGTTCATCTAACGATGGCTCATGGTGAACACATTGTCTGTCAGTTCTGTGATAAAAAGTTCGATACAGTAGCCCTTCTGAAGAGTCATGTGTCCGATGTACATAGTGGTGAATATACCGAATTCTGTCCAATATGCAACAAAGGATTCTTTTCGAGACAGTCTCTAAAAGTGCACATGACCGCACATGCACGCGATGGTAAATTGAACTACTGCGATATCTGTGGCAAGGGATTTAGGCACAAAGTTTATCTGGAAAAGCACGTGCAACAAGTGCACGTGGAGATGCAAGATCACAAAAAATATCAGTGTGGTGTCTGTGCTTACGAAACCCAATATAAAACAGTCTTCAGAGAGCACATGTACAAACATACCGGAGAAGACCAGGTGCCGTGCGACGTCTGTGGTAAACGCATGCGTAGGTCGTATATGAAAATACACCTAAGGATACATTCGGGATACAAACCCGAGATTTGCGAGTTCTGCGGCAAGGCGTTTACTGCGAGAAAATACTTGACGAAGCACAGAGTGGTACACACTGGTGAGAAGCCGTACCAATGTAGGGTATGTGATAAGAGGTATACCCAAAGAGGTACCTTAACACTACATATGAAAAGAAAGCACCAACAGTCTGATGTTGAAAATAGCGAAGAGGTTGTCGAGGGAGAAGAGGAAGAGGTAGATCAAGAAATCCTCGATCAGTTTGTTGAGGTCAGTGAAGATGGTGCTGTTGTTGAAGTTGCAAGGGAAGACGATCCTATGGAGGATAATCAAACTATAGGTGATCAGATTAATGTTGGTGAATGCGACGAGGAAGAACTTGTAAAAAATACGATTGTCGCTTCGGAAGAAGTGGTTGCATCAGGAGATGAGGTCGAAAACAAAATAGTATATGCACCTGACATCTATGAAATGCCCCATGAAAGTGAAGAATTAAAAAACAGCAAAGATATTATTATTTACGAGGTAACCAATAGTGCTGATGTAAACAGCAATGAGGCTATTAAAGTTGAGATAGAAGAAGAAATCGTGGAGGAAGTGATTATAAACGATAAAGAAGATATTAAAGTTGAAAACAGCGATGTTGAAGATGAAAGCGACGGTATCTATGAAGTGCATGGACACGAAAATGATAGCGATGAGGAAATTGAAGATATTGAAGATGAAAAAAATCGAACGAAAGTATTAAATTGGAAATGTTAG
Protein Sequence: MRTRCRVPRILRHKRSSNDATSDRVQKEKYQRGSPKTEKNALAPVIKYVYVKPFAQMSKELSLPTLNVADDSPKKSQAPKSKKRVRRETHKCDSCDESFNDRSSLIIHKTEKSIVRTREALREPPLKLTCEMCNRQFLSKGMLTRHHRNCGVMNSNDKPIKSNRRRNPTKPTKNKENETAEEGSTSCQKCGKVFKKDKYLKVHLTMAHGEHIVCQFCDKKFDTVALLKSHVSDVHSGEYTEFCPICNKGFFSRQSLKVHMTAHARDGKLNYCDICGKGFRHKVYLEKHVQQVHVEMQDHKKYQCGVCAYETQYKTVFREHMYKHTGEDQVPCDVCGKRMRRSYMKIHLRIHSGYKPEICEFCGKAFTARKYLTKHRVVHTGEKPYQCRVCDKRYTQRGTLTLHMKRKHQQSDVENSEEVVEGEEEEVDQEILDQFVEVSEDGAVVEVAREDDPMEDNQTIGDQINVGECDEEELVKNTIVASEEVVASGDEVENKIVYAPDIYEMPHESEELKNSKDIIIYEVTNSADVNSNEAIKVEIEEEIVEEVIINDKEDIKVENSDVEDESDGIYEVHGHENDSDEEIEDIEDEKNRTKVLNWKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -