Abak004199.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000001.1:17628191-17629807[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00018 0.013 15.7 0.1 2 23 79 100 78 100 0.97 2 10 0.019 1.4 9.3 5.7 1 23 121 143 121 143 0.96 3 10 9.6e-06 0.00069 19.7 1.7 1 23 156 178 156 178 0.99 4 10 0.00094 0.068 13.5 0.4 1 23 184 206 184 206 0.97 5 10 0.00012 0.0086 16.3 0.6 1 23 212 234 212 234 0.97 6 10 0.00018 0.013 15.7 7.9 1 23 245 267 245 267 0.97 7 10 2.5e-07 1.8e-05 24.7 2.0 1 23 276 298 276 298 0.98 8 10 2.3e-06 0.00016 21.7 1.1 1 23 304 326 304 326 0.98 9 10 1.4e-06 0.0001 22.4 5.9 1 23 332 354 332 354 0.98 10 10 0.00037 0.027 14.7 5.9 1 23 360 382 360 382 0.97
Sequence Information
- Coding Sequence
- ATGATTGCAGCGAATGTAAATACAAGTTTATCGACACGCGTAACGATATCAGCATACTTCGTGCAGCAAGAAGCCGTAATCGAGGCGTCGGAGCCGACCTCGACCCAAGTCTTCTGCAGCGCCGAGGACCAGACCTCCCTTCTCATGGCTGCGGCGCAGTCTCTCGAGGCCGACGACGAGAGCGTTAAAGTCGAGAACAATGGCATCGTCGTGGTGCCACCAGAATCCCTTCTCCAGTGCACCCTCTGCGGTGAAGCCTTCGTTGACGAGGCGTCGTTCGATTATCACCTGAAGACCCACGACGAAGAATCACCGGTTCATCATCAAGACGCCAACTTGATCGAAGAAACCGTCTTGGTCTATGCTTGCGATCAGTGCGAGTGCACCTTCGCCGACGAGGACTCCTTCCACAAGCACCGACTCCATCACGAAGATTTGCCCCAACAGATCGTAGGCGAGAAACTCTACACCTGCGAGCTGTGTGGCTACAGCAGTGCTCACAGGCAAAATCTTGCGAGCCATCAGCGTCGACACAATCTCGAGTACAAGTATCACTGCGAGATCTGTGGCGCTGGTTTCTACGCGCGCAACAACTACCAGGAGCACTTGTCGGTTCATTCCCGAGAGAAACCCTTCCAATGCGACATATGCCAGGCGACGTTTCGCTATCGTCAAGGTCTAAGGCTACACGCGAAACTTCATCAACCGGACTACGTGCCGCCCCAAAAGAAACACTGCTGCGAGGTCTGCAACAAACGTTTCTGTCGTAAGCAGGTCTTACTCGTACACATGCGCACCCATGGCAGCGCCGTACCACAGAGCGAGTTCGTTTGTCACATTTGTGGCAAATCCGTCTCCAGCAAAACTTATCTGACAGTCCACCTGAGGAAACATACCGGAGAGAAACCTCACGTCTGCGACCTGTGCGGAAAAGGATTTATATCTCAAAATTACTTAAGCGTGCACCGACGTACTCACACCGGTGAACGGCCCCACAAGTGCACGCACTGCGACAAAAGTTTTACCCAGAGAACGACGCTGGTTGTACATCTGAGAAGTCACACGGGAGACAAGCCTTATCCTTGCACTTGTTGTCACAAGAGCTTTGCCTCTAAGACGATGTTGAATTCTCATCTAAAGACTCACGCTAAACAGAATGCCAGGGCACAACAGGAGCAACGCACGCAGTTGCACTTGCAGCAGCAAAATTTATTGTTGTCGCCGGAGGAAGAAGCGCTTAGGGATCAGCAGCAACCGGTTGAGCCGGACAGTAGCAGCGTCGGGCTCGTACCGACCTAG
- Protein Sequence
- MIAANVNTSLSTRVTISAYFVQQEAVIEASEPTSTQVFCSAEDQTSLLMAAAQSLEADDESVKVENNGIVVVPPESLLQCTLCGEAFVDEASFDYHLKTHDEESPVHHQDANLIEETVLVYACDQCECTFADEDSFHKHRLHHEDLPQQIVGEKLYTCELCGYSSAHRQNLASHQRRHNLEYKYHCEICGAGFYARNNYQEHLSVHSREKPFQCDICQATFRYRQGLRLHAKLHQPDYVPPQKKHCCEVCNKRFCRKQVLLVHMRTHGSAVPQSEFVCHICGKSVSSKTYLTVHLRKHTGEKPHVCDLCGKGFISQNYLSVHRRTHTGERPHKCTHCDKSFTQRTTLVVHLRSHTGDKPYPCTCCHKSFASKTMLNSHLKTHAKQNARAQQEQRTQLHLQQQNLLLSPEEEALRDQQQPVEPDSSSVGLVPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01036478;
- 90% Identity
- iTF_01036478;
- 80% Identity
- -