Basic Information

Insect: Apocrypta bakeri
Gene Symbol: -
Assembly: GCA_018906985.1
Location: JACCIA010000004.1:5114530-5116766[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.73 52 4.4 0.2 1 21 327 347 327 350 0.88

2 10 0.012 0.89 9.9 1.6 1 23 357 379 357 379 0.98

3 10 0.0017 0.12 12.7 4.1 1 20 385 404 385 407 0.96

4 10 4.9e-06 0.00035 20.7 2.4 1 23 413 435 413 435 0.97

5 10 0.00015 0.011 16.0 5.6 1 20 441 460 441 463 0.95

6 10 0.00012 0.0083 16.3 1.0 1 23 474 496 474 496 0.98

7 10 5e-09 3.6e-07 30.1 0.4 1 23 502 524 502 524 0.99

8 10 2.7e-06 0.00019 21.5 0.6 1 23 530 552 530 552 0.95

9 10 5.4e-05 0.0039 17.4 0.2 1 23 558 580 558 580 0.92

10 10 2.9e-06 0.00021 21.4 0.5 1 23 586 608 586 608 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.73	52	4.4	0.2	1	21	327	347	327	350	0.88
2	10	0.012	0.89	9.9	1.6	1	23	357	379	357	379	0.98
3	10	0.0017	0.12	12.7	4.1	1	20	385	404	385	407	0.96
4	10	4.9e-06	0.00035	20.7	2.4	1	23	413	435	413	435	0.97
5	10	0.00015	0.011	16.0	5.6	1	20	441	460	441	463	0.95
6	10	0.00012	0.0083	16.3	1.0	1	23	474	496	474	496	0.98
7	10	5e-09	3.6e-07	30.1	0.4	1	23	502	524	502	524	0.99
8	10	2.7e-06	0.00019	21.5	0.6	1	23	530	552	530	552	0.95
9	10	5.4e-05	0.0039	17.4	0.2	1	23	558	580	558	580	0.92
10	10	2.9e-06	0.00021	21.4	0.5	1	23	586	608	586	608	0.98

Sequence Information

Coding Sequence: ATGAATTGGGAAATCAGTTGGGCCGATATGTGTCGTGCCTGTATGGAAGCAGACGGGGAATTGTTATCTTTGTTCGATGAACAAAATGAAACGGAGGAGAACGAGTTGTCCTGTAAACTCGCCGAATTATCTGGAATTGAGATAAGTAGATCTGATTGTCTGCCGACTAAGCTGTGTACAAAATGTGCTTACTATGCGAATACGTTTATGGAATTTAAAAGTATGGTTCGAGATTCCGATAAGAAACTGAGGGACATGTTCAACGAGCAAATTATTCTCTACGAGACAATGGATAACGAAGAAACTAGCCAAAGAAGTAATGAAGTTGAAGAATTAATATCGCAGGTGAATGAAGGGGATGACATGGAAACAAATCTTAAAATACCTGATAAAGATGTGGAGAAAATTCATTTGAACGAAGTACTGAAAACTTCAGAAGAAAGTGCAAGTGGCCCTGTAGTGGTAGATAATTTGGAACAAGTAGCATTAGAACTGGAACATAACGATACAGTCATTTTAAAGCTAGATCCTAGTGCAAATAAATCTTTGGGGGTCAACGAGGAATTGCAAGATCTTCACGTGGTATTTCACAAAGATCAAGTTGCAGATATTGAAAGAATAACTGAATCGGAGGCAAGTGATAATCAAAACAATTCAATGGTTGAAGAATTGGAAGATCCAGCTTCTGTTCAGACAACTTTGGGTTCTGCCGAAGAAACAAAGTCTTCCAAAGCAAAGAAGTCAAACAAGAAAAAAAATGCTAATGGTAAAAATAATATCAAAAAAGATTTTGAAAAAATTGTAGTTGAAGCAATAGAAGGTGAAGTACTGGAGGAAACAATGGAAAATATAGGCCAATCGCAGGACAACGATAGTGATTCTGATTGTGATACAAATAATCGTGGAAATGTTGTAGGTACTCTTAACGATACTATTACTAAAGTTAAAGAAATCAAGGAAGGAGGAAAGGTTGTGCAGCACCAGTGTACATTGTGCTTAAAAAATTATCCGGTGCTTTCGGAAGCTTTGAATCATATAGTAGATTTGCATGTGCCAAGTACAGGACCATTTTACTGTGTTGTTTGTGAAAAAGATTGTGATAGTATAAAAAAGTTAAAAATGCATATTAAAGTTCACAGTGGACCAACTCCGTACAAATGCTTTTTATGCAATAAGGCGTACGTAATGAAAAGATATCTCAAAAGACATATGGCTTGTCACACTGAATTTCCCAGGCACAGGTGTACAAAATGCGGTGAAAGATTCAAAGTTAAGAGTGAATTAGAAACTCACATAACGTCGCATGATCAAGGAGCTCCTTTTAAATGCAGTCAATGTCCGAGAGTATTTAATCATAAAGGAAATTTCAAACGACATTTGATTTGTCATCTTGACCCTCAAGGCCTTCATTTACCAAAATATCCGTGTACTGTATGTAAAAGAAGATTCTTAAATAACCGAACTCTTGTAACACATATGAGAGTACACACAGGAGAAAAACCGTACAAGTGTGAAGAGTGTGGCAAAGCATTTTCACAACAGGGTAATCTTATGAACCATCAGAAAATCCATTCAAACCCAAGAAGCTTTACCTGTGAAGTTTGCGGTAAAAGTTTTAATCAAAAGGCTACTTTAAGAGATCACAGTTTATTGCATTCCGGAGAAAAGCCTTACATATGCAGTGTTTGTGGTATGGCATTTACATTTACAGCATCCTTACGTCGTCATATGTGGACGCATACAGAAGGCAAACCCTTTGAATGCGATACATGCAATGCAACTTTTGTTGGAAGATACGATCTTAAACGACATATGAAAATCCATAATGGTAGATCCAAATCAAAACGTATGAAAATGTCAAAGGAAGAAACGAAAAAGGAAGATCAAGACAGACCAGCGGAAGAATTAATCAACATCATAGAAGGAGGCTCGATATCTAATACAGATACTATTTTCGTTGAACAGATATTTGTATGCGATGAAGCTATTCAGATCGTTACACCAGGAGAATCTGAAAAGGAAAACGTAGACTCCCTACTTGGCCTAATTCAATATTCGTAA
Protein Sequence: MNWEISWADMCRACMEADGELLSLFDEQNETEENELSCKLAELSGIEISRSDCLPTKLCTKCAYYANTFMEFKSMVRDSDKKLRDMFNEQIILYETMDNEETSQRSNEVEELISQVNEGDDMETNLKIPDKDVEKIHLNEVLKTSEESASGPVVVDNLEQVALELEHNDTVILKLDPSANKSLGVNEELQDLHVVFHKDQVADIERITESEASDNQNNSMVEELEDPASVQTTLGSAEETKSSKAKKSNKKKNANGKNNIKKDFEKIVVEAIEGEVLEETMENIGQSQDNDSDSDCDTNNRGNVVGTLNDTITKVKEIKEGGKVVQHQCTLCLKNYPVLSEALNHIVDLHVPSTGPFYCVVCEKDCDSIKKLKMHIKVHSGPTPYKCFLCNKAYVMKRYLKRHMACHTEFPRHRCTKCGERFKVKSELETHITSHDQGAPFKCSQCPRVFNHKGNFKRHLICHLDPQGLHLPKYPCTVCKRRFLNNRTLVTHMRVHTGEKPYKCEECGKAFSQQGNLMNHQKIHSNPRSFTCEVCGKSFNQKATLRDHSLLHSGEKPYICSVCGMAFTFTASLRRHMWTHTEGKPFECDTCNATFVGRYDLKRHMKIHNGRSKSKRMKMSKEETKKEDQDRPAEELINIIEGGSISNTDTIFVEQIFVCDEAIQIVTPGESEKENVDSLLGLIQYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -