Basic Information

Insect: Apocrypta bakeri
Gene Symbol: -
Assembly: GCA_018906985.1
Location: JACCIA010000024.1:1066448-1070429[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.8e-06 0.0002 21.4 1.4 1 23 147 169 147 169 0.98

2 15 6.1e-05 0.0044 17.2 0.2 3 23 177 197 176 197 0.99

3 15 0.00056 0.041 14.2 0.1 1 23 283 305 283 305 0.98

4 15 0.13 9.1 6.8 0.1 1 23 311 334 311 334 0.96

5 15 0.00037 0.027 14.7 2.0 1 23 360 382 360 382 0.97

6 15 0.9 65 4.1 0.0 1 23 399 421 399 421 0.91

7 15 0.042 3 8.3 0.3 2 23 429 451 429 451 0.95

8 15 0.057 4.1 7.9 1.6 3 19 460 476 459 480 0.90

9 15 0.00018 0.013 15.7 3.5 3 23 488 508 486 508 0.97

10 15 0.013 0.95 9.8 0.1 3 23 515 535 514 535 0.97

11 15 7.7e-06 0.00055 20.0 0.4 1 23 544 566 544 566 0.98

12 15 0.0033 0.24 11.7 0.2 3 23 574 594 572 594 0.97

13 15 0.003 0.21 11.9 0.2 3 23 602 622 600 623 0.94

14 15 0.014 0.98 9.8 0.0 1 23 637 659 637 659 0.95

15 15 0.0076 0.55 10.6 0.0 1 20 1097 1116 1097 1119 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.8e-06	0.0002	21.4	1.4	1	23	147	169	147	169	0.98
2	15	6.1e-05	0.0044	17.2	0.2	3	23	177	197	176	197	0.99
3	15	0.00056	0.041	14.2	0.1	1	23	283	305	283	305	0.98
4	15	0.13	9.1	6.8	0.1	1	23	311	334	311	334	0.96
5	15	0.00037	0.027	14.7	2.0	1	23	360	382	360	382	0.97
6	15	0.9	65	4.1	0.0	1	23	399	421	399	421	0.91
7	15	0.042	3	8.3	0.3	2	23	429	451	429	451	0.95
8	15	0.057	4.1	7.9	1.6	3	19	460	476	459	480	0.90
9	15	0.00018	0.013	15.7	3.5	3	23	488	508	486	508	0.97
10	15	0.013	0.95	9.8	0.1	3	23	515	535	514	535	0.97
11	15	7.7e-06	0.00055	20.0	0.4	1	23	544	566	544	566	0.98
12	15	0.0033	0.24	11.7	0.2	3	23	574	594	572	594	0.97
13	15	0.003	0.21	11.9	0.2	3	23	602	622	600	623	0.94
14	15	0.014	0.98	9.8	0.0	1	23	637	659	637	659	0.95
15	15	0.0076	0.55	10.6	0.0	1	20	1097	1116	1097	1119	0.94

Sequence Information

Coding Sequence: ATGGACGTAAGTGGAGATCTGACCCTCCAGTGGGTGGAGGAGGTTGGAAATGTTATCCACGAAGAAGTAATATGTGGTCTCGAAGCAGAACTAGATGCTCCTGTAGAGGAGGTAGTTGGAGCATGCGAAGAAGTTACAGTAGAGGAGACAGTGGAATCTGTCCCAGAAGACTCTACTACCATAGCAGATACAGAAATTCTAATGGTTCCACAAGCAAGTGATATTGAATCTATCTACATTGTTCCACAAGATCAAGGACATGATTATTTGAATATACAAGTCACAGAGGAAGTGATAACGGATAATTGGGATAGATCTGGTCCTGATGATGGAATGGAAGTACCAGAAACTAAAGTATCACATGATAATTTATTGGAGTACGATGATATGGAAATACCTTTACCAATTGATCAAGATTCTTATACAAACACAAGACCATATCCATGTGATTTCTGTAGTAAAAGATTTAGGAAAAAGGCAAATCTTATGAATCATATGGTTACCCACCAAACTGAACGACCTCATGGATGTAATTTGTGTGGGGCTCGCTATGTAAGAAAGTCTGATTTAATGAATCACTTAAAAATCCATGCATATGCTCCAACTCGTGATGGTTTAGAAGATGATTTGGAAGATCCCTTAGCAACTGAAGAAGAAGAAAATCATCCTGTAAAGGGTAGACGTAAGAAGCTTCAAACTAATGTTCCAAGAAAGCGCAAGGCTCCTCCAGGAGCTAAAAGAACCGTTCTTGATGATGCAACTAAATCAGATATGAGCAAGTGGACAAATCAAATGACTAGTGAACAACAAATACCACGATGGCCAGTTACTGATGCCACAAAACCGTATGTATGTCAATTTTGTGGAGTTGGATTTGCGAGGGAAAAGGCCCTCGCATCACATTCACGTATTCATGGTGGTGACAGTCCGTTTGAATGCATGACTTGCGGTGAAATGTTATGGGACGTTAACACACTTCAAGAACATATGAGAGTTAAACACGGTCTTGGCATCAACCAGCCCGAAAACGAAGTTGAAAATGAGTCAAATTATGCAGGAGATGAAAGGTTTGGCGAATTTTTCTGTGACACTTGTGGTGTTCCATTCCACCGGTTAGATCTGTTGAAACGTCATAAAAAGATTCATATAAAACAAGAAGTGGATACAATGGATGGTGGTAATTCCAGTCAACATCACGTCTGCAATGTATGTGGTGAATGGTTCGAGGAAGCTTTAGCCTTGTTAGCTCATGCTGAATCCCATGCTAGCAGGTCACCAAGTCGCAGGTGTCTTTTATGTGGTGAAAGGTGTCGAGACGACGCTGAGCTTGCGGAACATGTTCGTGAGATGCATGCAGAAGATGCACCTCCAAATACTTGTATTATGTGTGGAAAAACTTGCAAAGACAAACGAAGCTTATTAAAACATTCGTGGATTCACAATACAGATAAAACATTTGGCTGCACTAAATGCGGAAAGCGTTTCCATAGTAAAGCAAGATTGCGAAGGCACATGGTGTCGCATCGCAATAAAATGGTCGCGTGTGATGAATGTGGTGAAGAATTTCCTGACGGTAGAGCTCTAGTAAGTCATCGTCACTCGCATAATAAAGATCTTGGTGGACGTACGTTCCCTTGCAGAGAGTGTGGAAAAACTTTTGGCAGTCGCAGCTCTCAGCAAATTCACATCCGCATTCATACTGGTGAAAGACCTTACGGTTGCCGCTTTTGTTGGAAAGCATTTGCGGACGGAGGTACCCTGAGGAAACACGAACGGATACACACGGGAGAAAAGCCCTACGGCTGCGCCATATGTCCTCGTGCTTTTAATCAAAGAGTTGTTCTACGTGAGCACGTCAGGGCTCACCATTCAGGACCCGATCCCAAGTGTCACAATAGCCTTACGCCTTATATGTGTAAGGTTTGTGGAGATACACTTCCTACGTCAGATGAATTAGTAGCTCATATAGTAGCCCATTGCGATGAGAATACTGCAATGCGTCGACAGCCTCAATCAGGCCCGCGAAAATACAAGCGCCGTCGTAAACTTAAGCACGACGGAACGGCATTCAGCGGTCGTGCAAGCGAATCCTTTGACAATATCGATGGACCTTCGGATTCGGATGAAAATACAAAGCGTAAACTCGGCAAGAAAAGCAAACAACATCGTGCTAATGTCGAAGAAGGCTATCAAAATGTCCTTAAGAGCTTTGAAAGTTCATTGCAGAACATAAATTCAATCGTCAGTAACTCTAAAACGCATCCTGCAAAGACGAAAACTCCCAAGAAAAAACCTAAGAAAGAAGACAAGAAAAATAGTGTGGCTTTGAATAGTAGTACTGACACACCAACGGCCAATCATCCAGGTAGACCAAAAATGATTCATACACAGAAGACTAGAGTACCTGTCCAAATGGGTACAGATGGAGTAAAGAAGGGACAAAAAACAAAAACTATGGTTACAAGAACACCCAAAGTTATGCCAAACGAGCAGCAACAAGGATTACCATCGCCTCAGCTTCAACAGAAGGTTTCGGGCCCCGCACCTGGTGGGGAAAGAAATAGGCCGCGTACCAAGAATGTTAGTTATCACGTAGAAGGTAGACAACAATTTATTCCCGCTACCTTTCCTAAACCAAGGGACGAAGAGACTGATGCAACGCCCGAAATACCGCAAGCCATGGAAATGGTTAATATCAAAATAGAGCCTGATTTGCCAAAATCCGCTCCTCAACAAAATCACGCGATCAATAATAATGGCGATATTGTCGAATTCAAGCAGGAAAAGCTTGACAAACCAGAAAAACCGACTCCTAAGAAAAGAGGACCAGTTAAAAAAACAAAGAGGAGACAAACTACTACAACGAGGAGATCCAAAGATAAGGTCGCTATATCTACAACAGAGGTGCCTAATAACAATAACGTTGAAGTACCTGGATCAATCACTCAAGATGTAGAAATGCCGCAACAAGAGGAAATACTGTCTGGACAGGAGCACCAGGTACAGCCAACGCAATTATTTGAGTCGGTGGTAGACGGTAGTAATCTTGAGGTCGCATTCGAGGCAAACATTGTCTCGGAACAAGAGGAAATGGTGCAAGAATCGATCTTGCCTGATCTGGATAAGGTAAATCATGTGGATGATTTAGGTTCGAACAGTAGTGGAACTGGTAACGTGAAACTCAGTGTGAAAGTGGAATCAGCACCAGACACAATGCTTGATATGCACAGTTTGATGGGATCAGTAGAGGAGTCAGTACCAGAGACCATTATCCCAGATACGGTAGAGTACACCTGCGAAATGTGCGCTGCTGTTTTTTCAACGAGGGCTGAACTTCTTGTGCATGTTCCCATACATATTTGA
Protein Sequence: MDVSGDLTLQWVEEVGNVIHEEVICGLEAELDAPVEEVVGACEEVTVEETVESVPEDSTTIADTEILMVPQASDIESIYIVPQDQGHDYLNIQVTEEVITDNWDRSGPDDGMEVPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSKRFRKKANLMNHMVTHQTERPHGCNLCGARYVRKSDLMNHLKIHAYAPTRDGLEDDLEDPLATEEEENHPVKGRRKKLQTNVPRKRKAPPGAKRTVLDDATKSDMSKWTNQMTSEQQIPRWPVTDATKPYVCQFCGVGFAREKALASHSRIHGGDSPFECMTCGEMLWDVNTLQEHMRVKHGLGINQPENEVENESNYAGDERFGEFFCDTCGVPFHRLDLLKRHKKIHIKQEVDTMDGGNSSQHHVCNVCGEWFEEALALLAHAESHASRSPSRRCLLCGERCRDDAELAEHVREMHAEDAPPNTCIMCGKTCKDKRSLLKHSWIHNTDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRTFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCHNSLTPYMCKVCGDTLPTSDELVAHIVAHCDENTAMRRQPQSGPRKYKRRRKLKHDGTAFSGRASESFDNIDGPSDSDENTKRKLGKKSKQHRANVEEGYQNVLKSFESSLQNINSIVSNSKTHPAKTKTPKKKPKKEDKKNSVALNSSTDTPTANHPGRPKMIHTQKTRVPVQMGTDGVKKGQKTKTMVTRTPKVMPNEQQQGLPSPQLQQKVSGPAPGGERNRPRTKNVSYHVEGRQQFIPATFPKPRDEETDATPEIPQAMEMVNIKIEPDLPKSAPQQNHAINNNGDIVEFKQEKLDKPEKPTPKKRGPVKKTKRRQTTTTRRSKDKVAISTTEVPNNNNVEVPGSITQDVEMPQQEEILSGQEHQVQPTQLFESVVDGSNLEVAFEANIVSEQEEMVQESILPDLDKVNHVDDLGSNSSGTGNVKLSVKVESAPDTMLDMHSLMGSVEESVPETIIPDTVEYTCEMCAAVFSTRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01219230;
90% Identity: iTF_01190660; iTF_01037257; iTF_01036462; iTF_01035664; iTF_01487241; iTF_01274732;
80% Identity: -