Abak001216.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000002.1:10872941-10876017[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.006 0.43 10.9 0.9 1 23 273 295 273 295 0.95 2 12 5.6e-05 0.004 17.3 1.2 1 23 303 325 303 325 0.98 3 12 1.2e-05 0.00088 19.4 0.7 2 23 333 354 332 354 0.97 4 12 0.00017 0.012 15.8 1.2 1 23 360 382 360 382 0.98 5 12 3.1e-05 0.0022 18.1 2.3 1 23 389 411 389 411 0.98 6 12 6.8e-06 0.00049 20.2 0.6 1 23 417 439 417 439 0.96 7 12 1e-05 0.00075 19.6 0.1 1 23 445 467 445 467 0.98 8 12 5.8e-07 4.2e-05 23.6 1.2 1 23 473 496 473 496 0.96 9 12 4.4e-06 0.00032 20.8 0.5 1 23 502 525 502 525 0.96 10 12 4.6e-06 0.00033 20.7 2.8 1 23 531 553 531 553 0.99 11 12 7.5e-05 0.0054 16.9 0.4 1 23 559 581 559 581 0.94 12 12 0.00031 0.022 15.0 0.2 1 23 587 611 587 611 0.94
Sequence Information
- Coding Sequence
- ATGACTGCGGATGCAGAGAAGGATGCAACACGATGTTTACTTTGCGACAGCAAAGTAGGAGTGTCGATAAGAAATAGTATTGGAATATTTGGAGATAATGCAGTAACAAATTTAAATAAACCTATTGTAGATGTTCTTAGTTCTGCTATAAAAACTGTTATTAATAAAGATAATACACACTCAAGTATCGTTTGTAAAAAATGTTACAAACTTATTAATGAGGTAGCTGATGAATTGGAATGCAAATTGGCTGAAGTAAGACAAGAAATTAGTAATTTGTTTAGTAAAACTTCTATGAAATTTGAGGTATCTGTTTCAAATTCAGAAGACTACACTGACCATGATTACTTAGATAATGTCGAAAGCATTGAAACAGTACCGATAATCAAGTCTGAAAAGGTAAATAAGGAATCCAAAAGAAAAACGAAGAAAGTTACCATTTCAGATGTGTCAACTAATATTGAGATTCCAGAGATCAACGATACAGACAGAAATATAGCAATAGATGAAACAATTATTGAAAAAATTGAAATACCTGAAGAAATAGAGGAGGCTGAGGATAATATAGACGATGATGATCTCCATGAAAATGTAGAAACAAACTCACTTGACGATGAATCACAAATTGAAGAAGTAATAATAGAAAAGCCAGATTCTCCTAAAAAGCAAAAAATTAAAAAAGAACAAAACGAAGAACTGGCCACCAGAGTTGATGAAAATTATTTATGTAACATATGTGAAAAAGATGATAATAATGAATGTAAAGATGCTAAAACAATAATTTCTCATATGAAAGAACAACACGATCTTCGTTTATATATTTGTGATGTATGTGGTGATCAATTCCGAAAAAGAACAGATTTATCACATCATTTAGATGATCACGTTGCCAAGGAAGAAGGTGATTTCCAATGTGAAGTATGTAACAGGATATTTAATAATTTACGACTGTTTCGTATTCACAAACGAATTCATTATCCTCAAGCAAAGTCTTGGTCGTGTGAAACTTGTGGAAAACGATACAGTTCCAAAAATTTACTGGAAGAACATACAAATACACATACTGGAAATCGTCCTTACGTCTGTGAAGTATGTGGTAAAGATTTTGCTTCAAAGTACACTCATAGAGCTCATGTTAAAACTCACGAAGTTAGACCCAGGCCATTTGAATGTACGCAATGTAATAAAACTTTCCTTAGTCAACAAAATTTGACACAACATGTGAAAACTCATAACGGTGTAAAAGAATATGTTTGTCATCAATGTGGAAAAGCATTCGGTTCAGCTCATAATCTCGAAGTTCACAACATTGTTCACACTGGGTATAAGCCATATATATGTCGGGTATGCGGTAAAGCATTTGCGCGAAAAGCTGAAATACGAGATCACGAAAGAACGCATACAGGCGAGAAGCCTTATCAATGTGAATTTTGTGGAGCAACGTTCAGCCAGAGATCAAATCTACAATCACATAAGCGAGCGACGCACTACAATGACAAGAGATATAAATGCGATGAGTGTGGAAAAGGTTTTAAAAGAAGACGATTGCTGGATTATCATATTAAAGCTGCTCATACAGGAGAACGTCCCTATAAATGTGAAACATGTACCGCTACGTTCGTTTATCCAGAACATTTTAAAAAACATATGCGAATTCATACAGGAGAAAAGCCCTATTTATGCGAGGTTTGTGGTAAAGCTTTCAATAGCAGAGATAATAGGAATGCTCATCGGTTTATTCACAGTGATAAGAAGCCTTACGAATGTTTAGTATGCGGAATGGGATTTATGCGAAAACCTTTATTATATACTCATATGCAAACGCAGGGTCATTTAAACGACACAATTGTTGTGAACCAACCAAGACTGACCACTGAGGATGACGTAATTATCCAAGAAAATCGAGTTCATTTTGTAATGGATGATGGCACTACTGAGTTGGGCGAGAACACGCAATTAATTGTCGCCGAACTTAAAGATCACGTAATTATTCAAGATGGGGATCAACAAAATGTTATAAGTCTCGCAGATAGTAATATGAGCACTGAAGAAATAGATCAACTTGTTGTAGATGGACAGATGTCCTTTGAAGATGCATCCCAAATACAGTGCAAAACAGAAGCGGCAGACACAATCGAAGAAGTATATGGATATCAAGACGCAGATGGTAACACGATAGTTTTACCACCAGGCGCTGATATAAAAGAAATCATTGGTGAAGATGGAAGCAAGACGATGCGGCTAGTGCAAATTCGCATACCCAGTGGTAGTGATGGCAAAAATTGGCTAAGCTTAGTTCAAGAAGCAGACGAAGAGCAATCTTGA
- Protein Sequence
- MTADAEKDATRCLLCDSKVGVSIRNSIGIFGDNAVTNLNKPIVDVLSSAIKTVINKDNTHSSIVCKKCYKLINEVADELECKLAEVRQEISNLFSKTSMKFEVSVSNSEDYTDHDYLDNVESIETVPIIKSEKVNKESKRKTKKVTISDVSTNIEIPEINDTDRNIAIDETIIEKIEIPEEIEEAEDNIDDDDLHENVETNSLDDESQIEEVIIEKPDSPKKQKIKKEQNEELATRVDENYLCNICEKDDNNECKDAKTIISHMKEQHDLRLYICDVCGDQFRKRTDLSHHLDDHVAKEEGDFQCEVCNRIFNNLRLFRIHKRIHYPQAKSWSCETCGKRYSSKNLLEEHTNTHTGNRPYVCEVCGKDFASKYTHRAHVKTHEVRPRPFECTQCNKTFLSQQNLTQHVKTHNGVKEYVCHQCGKAFGSAHNLEVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEDDVIIQENRVHFVMDDGTTELGENTQLIVAELKDHVIIQDGDQQNVISLADSNMSTEEIDQLVVDGQMSFEDASQIQCKTEAADTIEEVYGYQDADGNTIVLPPGADIKEIIGEDGSKTMRLVQIRIPSGSDGKNWLSLVQEADEEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01190656;
- 90% Identity
- -
- 80% Identity
- -