Abak014133.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000023.1:578255-582986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.018 1.3 9.4 1.4 1 23 334 356 334 356 0.97 2 17 0.066 4.7 7.7 1.5 2 23 401 422 401 422 0.95 3 17 0.00062 0.045 14.0 0.2 2 23 485 506 484 506 0.96 4 17 1.3e-05 0.00093 19.3 1.0 1 23 577 599 577 599 0.95 5 17 0.00068 0.049 13.9 0.7 1 21 606 626 606 630 0.92 6 17 0.013 0.95 9.8 2.4 3 23 708 728 706 728 0.95 7 17 8.7e-05 0.0062 16.7 6.0 1 23 774 796 774 796 0.97 8 17 0.00027 0.019 15.2 0.7 1 20 801 820 801 822 0.94 9 17 0.046 3.3 8.1 0.3 2 23 833 854 833 854 0.97 10 17 1.2e-05 0.00087 19.4 0.7 2 23 892 913 891 913 0.97 11 17 2.5e-05 0.0018 18.4 1.6 1 23 918 940 918 940 0.95 12 17 2.3e-05 0.0017 18.5 1.6 1 23 946 968 946 968 0.98 13 17 4.3e-06 0.00031 20.8 0.4 1 23 986 1008 986 1008 0.95 14 17 3.5e-07 2.5e-05 24.2 0.6 1 23 1014 1036 1014 1036 0.99 15 17 3.8e-05 0.0028 17.8 0.2 1 23 1042 1064 1042 1064 0.97 16 17 0.0023 0.17 12.2 7.3 1 23 1070 1092 1070 1092 0.96 17 17 0.01 0.72 10.2 0.4 1 20 1098 1117 1098 1119 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTCGAAGAAAATACGTCCGAGGCACAGCAGCCGGACGACATGAACATGCCGACGCAGCTGGAGATTTGTCGAGTTTGCCTCCTCGGTAATCAATTGATGCGAGAGCTCTTTCGCCAGGATGTTATGCCAAGTCTATCTGAAAAGGCCATGAGCTTTGCTAACGTTAAGATTCTGCCAGGAGATGGATTACCATCACATATCTGTTACAATTGCATAGAAAAGCTTGATTTAGCCTACAAATTTAAGCTACAAGTTGAACAGGCTGATAGTGTGTTGCGAGAGAGATTAGATTCAATCAATATAAAGGAGGAACTCTTTTTTAATGAAGTAAACTTGTCATCTCATAGAAATGATGTAGCACAAATAGCTGAACAAAGTCTGCTTCTAAAGGATCATATAGATTTGTTAAGTGTTCAAAAACTAGCTGATGGAGATGATGTTTCTCGGAGTCAAGAGCTGATTAATGCTGAATCAGAAAAACATTGTAGAGAAGAGCATCAGCAATTAACTCAAAATGAGCAGCACGTGCAAATTCAGAGTGATGAAGGAACACAAAAAATGCATGGGTCGGAGGAGCATCACAATCCATCGTATGAAGCGCATCAACTTCAACAAATGATGCTTAAAGAGATCAGCCATCAAGAAGAAATGCAAGAAACATTAAAACATACTCAGCAGTTGGCAATGGACGAACACAATTATGTAGCAGAAGAACAGTTATGTAATTCATCGATTCCTGTTAAGGATCAAATAATTACAAAGGGAATTCAATTAAATAGTAAGCAATGCATAGAAAATGAAGTTTTAAGTGAAACTCATGAATTGTCGAGCAATTTTTCTCCAACTGAAACAACTCGAAGAAGTAAACGTAAAATAAATCAAAGACGGTTTCAGGTGGAGAAAGATTCTGATGATGGCAACTACTTTGAAAACTTAAATTTAAGTTCTCGATTGAAGAAAATCCAGTCTGAAAAATTAGATAAAATTTATTTTATGTGTTATTTATGTGATAGACAATTTATATCAAAGAATATATTGAAGGAACATATGTTTTCTCACGATGAAGTAAAAAGAACTCTCTCCATCATAAAGAAAGAGCCAGAAAAATTATCAAATACATCAGAAAGGGAAAAAAATCTAATTGTAAGCGTAATTTCGTCAAAACCACCATCTAGCGGAAAGCAACCAAATACCTGTCCTCATTGTGGAAAGGAATATCTTTATGTTATTTCTTTTAATAAACATTTAAAACAGCATGAGAGGGAAAAAATGAAAGAAGAGCCTATGCCATTAGAAGTTTCCTTTGGAGAAGATAATGACTCATTGAATTTTTACAACTCTGAAGAAAATAATGTAATTCATTCAGAAAGTGAAGAAGAATTTACTACTGAGCAGGAAAAAGATGTTTTAATAAAAAAAGAACTAGTTAAAAGTGATTTGATTAAGTGCAATGTTTGTGAACAAGAGTTCAACACAGTGGATGAATTAAAAGATCACCAATTACAACATGTTGTTGAAGGTGTACTCACTGAAAATGATGTACAAGTTGAAAATAAAAAAGATGAAGTGTTAGATTTGGGTAATGCATTAAACAAAAATAAAGAGGAAAATGAAATTAAAATCATAGAAAATAAAAACTTGTCTTGTCTGCAATGTTCGTCTAGCTTAACTGAAAAAAAAACTATGTGCTGTCACTTAAACAACCATAGTGAGAATAAATTTACCTGTAATCTCTGTAATCAGAGTTTTATTCGTAAGGATCTACTACGTCGTCATGCTGAACAACATAGTAATAAATTAAAGAATTTTAGATGCACTCAGTGTAACAAGAGTTTTGGTAATGAGTTAACATTAAGGAACCATCTTATAGCAACAAATCACAAAACAATCATCCATGGACAAGAATACGATCCCAATAAAAGAATAAAAAGGGTTGCAGCTAAAGCTGCACAGAAGATTATAGATCAGATAAAGACTGATCTGAATTTGGATGAATTTGAAGAAGAAAAAAATGAGAATGCTGAAACTTTTGAACAGGAATTGGATCCTCCTGCAGAGGAAGAAATAGAAAGAACTTTGGTGTCAAAGAAGCGTTGTGTAAAATCTCTGTTTTGTGCTACTTGTAATCAAAAATGTATTTCAAAACAAGCTCTTACAAAACATATGGAGCAGCATGTTAAAGATGAAAGTACAGTGAAGCAGGAAAAATGCAAGAAGCCTGAAGAATTTCATGAAAACGACGATAACGATGACGATATCGAAGAAGATGACGATGACTTCGAAGGAGGTCTTGACTGGCCGGTTGATACTCATGAATGTCCCACTTGTAAGAAATGTTACAGTACCAAGAAATCTCTTCTCCGACATCAACTATTGCACGAAGAGCCAAACTTTGAGTGTGACATTTGTAATGTTAAGTTCTACAGAAAGGATAAGCTTAAAGCCCATTATGATAAGTGTTCAGAAAAGAATCCAGATCAGGTACGAAAATGTAACATATGCGGGGATACCTTCGAGAATAATGAAATTTTAAAAGAACATCGAGCGAAGCACGTTATGGAAGGAATACTGACGGAAGAGGATCTACGAGAGATCGAACCTAGGCCAGAAGATAGGAATTCAGAGAAAACAACAAGAAAAAGGAGAACAGATATTGTTGGACTTGAGTGTACTGAGTGCAATAAGCGATATACATCTAGAAAAGGATTGCTCAGGCATATACAGGTACACGAAGGCAAAAAGTATCTATGCGATATATGCCCCAAGAAATTTTATAGGCGAGAACATTTGAAGATCCATGTGGCGAAACATAACATGGTGAAACCGTACAAATGCCCGCGTTGCACCAAACGCTTTATAAAGGAAGAGCAACTAAACAACCATATAACAAAGCATGACAAATCATTGAACAAAAAGACAAAACCTGATTCCGATACCTCCAAAAGATTTTTGTGCGAGATCTGCTCGAAGAGTTTCACACAATCCACGACGTTGATAGCGCACTTGCGAGCTCATAACGGCATTAAACCTTATGTCTGTGAAGTTTGCTCGAGGCCGTTTACGACAAATGCATATCTTAAAATGCATATGAGAACACATACTCAAGAGAGACCCTACATTTGTCAGTACTGCTCAAGAGCATTTGCTCGAGCCGATACTTTGGCTAATCACTTGACATCGCATACGGGCGAAGCAAAATATCATTGTAAGTACTGCTCAAAGCACTTCAGACGGTTAAAATCATTAAAGGAGCATGTATTCATACACACCGGACAGCGTCCATATGCTTGTCCTACTTGCGACAGGAGATTTAACAATAACGGTAGCAGATATGCACACAGTAAGCGCTGCAAACAGAATGTCCTGCAGGTTTGCAACACAGACATTACGGTACATAACGTCAACGTGGAAACGCAAGAAATACAAGAAATGCAAGAGATGCAAGAGATGCAAGAGATGCAAGAGATGCAAGAGATGCAAGAGATGCAAGAAATGCAAGAAATGCAAGAAATGCAAGAAATGCAGGAAATGCAAGAAATTCAAGCTATTCAGGAGTTGCAAGAACATCACGTCGAACAGGATGAACAGGAGCATCAGTTGCATCTGCAACAAGAACAACATGAACAGATGCAGCAGAGTCAACTTCAACCACAGAGGATACATCAAGCAACTTTAAGTCAGGCGCAGATTATTAAAGGCCAAAATATCAAAACTATTACCATAACGAGGCCTGATGGGGGTTTAACTCAACAACACGTATTGGGACAAGAAATCCTTATGCCCTTGATATTACCGCTTACAGTGACACTCTCCGATGTAGGCGAGGAGGTCATTCTACCAGAGGGTACTAAAATTTTTACCACTTAA
- Protein Sequence
- MDAVEENTSEAQQPDDMNMPTQLEICRVCLLGNQLMRELFRQDVMPSLSEKAMSFANVKILPGDGLPSHICYNCIEKLDLAYKFKLQVEQADSVLRERLDSINIKEELFFNEVNLSSHRNDVAQIAEQSLLLKDHIDLLSVQKLADGDDVSRSQELINAESEKHCREEHQQLTQNEQHVQIQSDEGTQKMHGSEEHHNPSYEAHQLQQMMLKEISHQEEMQETLKHTQQLAMDEHNYVAEEQLCNSSIPVKDQIITKGIQLNSKQCIENEVLSETHELSSNFSPTETTRRSKRKINQRRFQVEKDSDDGNYFENLNLSSRLKKIQSEKLDKIYFMCYLCDRQFISKNILKEHMFSHDEVKRTLSIIKKEPEKLSNTSEREKNLIVSVISSKPPSSGKQPNTCPHCGKEYLYVISFNKHLKQHEREKMKEEPMPLEVSFGEDNDSLNFYNSEENNVIHSESEEEFTTEQEKDVLIKKELVKSDLIKCNVCEQEFNTVDELKDHQLQHVVEGVLTENDVQVENKKDEVLDLGNALNKNKEENEIKIIENKNLSCLQCSSSLTEKKTMCCHLNNHSENKFTCNLCNQSFIRKDLLRRHAEQHSNKLKNFRCTQCNKSFGNELTLRNHLIATNHKTIIHGQEYDPNKRIKRVAAKAAQKIIDQIKTDLNLDEFEEEKNENAETFEQELDPPAEEEIERTLVSKKRCVKSLFCATCNQKCISKQALTKHMEQHVKDESTVKQEKCKKPEEFHENDDNDDDIEEDDDDFEGGLDWPVDTHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILKEHRAKHVMEGILTEEDLREIEPRPEDRNSEKTTRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCPRCTKRFIKEEQLNNHITKHDKSLNKKTKPDSDTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCSKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNVLQVCNTDITVHNVNVETQEIQEMQEMQEMQEMQEMQEMQEMQEMQEMQEMQEMQEMQEIQAIQELQEHHVEQDEQEHQLHLQQEQHEQMQQSQLQPQRIHQATLSQAQIIKGQNIKTITITRPDGGLTQQHVLGQEILMPLILPLTVTLSDVGEEVILPEGTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -