Abak004190.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000001.1:17595182-17599997[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.28 20 5.7 1.9 1 23 151 174 151 174 0.94 2 22 2.5e-06 0.00018 21.5 0.8 1 23 180 202 180 202 0.99 3 22 1.1 80 3.8 3.3 1 23 211 234 211 234 0.92 4 22 0.0059 0.42 10.9 3.9 1 23 240 262 240 262 0.96 5 22 1.9e-06 0.00014 21.9 0.8 1 23 267 290 267 290 0.96 6 22 0.16 11 6.5 1.5 1 23 296 318 296 318 0.97 7 22 0.0024 0.17 12.2 4.2 1 23 322 345 322 345 0.96 8 22 0.0021 0.15 12.3 0.6 3 23 353 373 352 373 0.98 9 22 1.9e-05 0.0014 18.8 1.0 1 23 379 402 379 402 0.97 10 22 0.00024 0.017 15.3 0.6 1 23 525 547 525 547 0.97 11 22 6.4 4.6e+02 1.4 0.5 1 23 599 622 599 622 0.88 12 22 1.7 1.2e+02 3.2 1.2 2 16 665 679 664 682 0.92 13 22 3.2 2.3e+02 2.3 5.2 1 23 693 716 693 716 0.96 14 22 0.0065 0.47 10.8 1.8 1 23 728 750 728 750 0.99 15 22 0.11 7.6 7.0 1.1 1 23 766 789 766 789 0.95 16 22 0.034 2.4 8.6 2.9 1 23 802 825 802 825 0.96 17 22 2e-05 0.0014 18.7 2.3 1 23 831 854 831 854 0.95 18 22 0.00084 0.06 13.6 0.7 3 23 861 882 859 882 0.93 19 22 0.0037 0.27 11.6 0.4 1 23 887 910 887 910 0.96 20 22 4.1e-08 3e-06 27.2 0.8 2 23 917 938 917 938 0.97 21 22 4.2e-07 3e-05 24.0 0.9 1 23 944 966 944 966 0.96 22 22 6.6e-07 4.8e-05 23.4 0.1 1 23 972 994 972 994 0.98
Sequence Information
- Coding Sequence
- ATGAAATTCAAAATAAAAATGATACCGGATAGGAGAGGCCATTCACGTTGGACCCGCAAGCAAAGCATCATCTCACGAATACGAGTGCGCAATGCTTTGGATCTCATGGATTTGACACCTCCACCTCCGCAAGCTGACGAAGATCCACCTTACGAACCGCCCACCAAGACGATTTCCAAGTGCAGCGATAAAGCGACTACCAAGAAGAAGCGAGCAATGTCGTCGAAGGTAGCCAAGAAGAAAGACTCGGAATGCGATTCCGAAAACGAAAAAGAAACCGTCGACACTCCAAAAGATACGAAGTCACGCCTCAAAACCACGGCACCTGGCAAAACTTCAAAGAAGAAAGCTGTCTCCAAGTCAAAATCGTCGGTGAAAAAATCAGTGAAACCAAAAGACGAGGAACCGGAGGAAATAAAACGCCTTTACAGTAAATTAAAAACTGGATACTTCGTTTGTGTAGCCTGCTCCGACAAGTTTACTCATCGATACAAAGTCCGCGCTCACATACGTTTGAAGCATCAACCTCGCCAGACGTTCCAGTGTCCCGAATGTCCGCTGATCTACAAATCGAAGTACCAACTGAAAATACACAGAAACACTCATCTTGAAAACAAAAGCGATTTTATGTTCTTCTGCGACAAGTGCGATTATCGTGCATTGAGCAAGAATAACTTAAAGCATCACGAGATCAGAAAGCACTCGAATGATTATCCGTTCGAGTGCGATCATTGCAAAAAACGATTCAAAGTCAAAATGGACCTGAAATTTCATCTCGGAACGCATAGCGATTCCCAGCACATGTGTGACATTTGCGGTAAAATGTACAGTAGTCCAGAATCTTTGTACAAGCACAGACGTGTCATACATCTCAACGAATACAAGTTCAAGTGTCCTAAGTGTTGGCAGAAGCTGCTCAGTCAAGAGAGTTTGGATCATCACCTTGAAAAGCATAAAGTACTTCACAGTTGCGACGAATGCGATCTTAAATTTACCAAGAAGAATTATGTAACGAGGCACAAAAAACGGGTGCACATGGTCGAAAAGAATAAACTCTGCCCGGTTTGTGGAAAAAGTTTTGTTTGCATGGCGACACTGCGGGTTCATTACTTGACGCATGCAAAAGTCAAGCCGTACATGTGCAACGTATGCGGTTTGAGCTTCACTCAACGCTCATCGATGATGTTACATTGGAAAAGAAAACATCCTGATGCTGAGGCACCACCACCGCCGGTTATTCTTACTAACTTTTTCGACTCCATAAATGCAGAGGTACAAAAACTTGCAGTACCTGTTATGGAATCTTCGTCGAACGATGCTTCGTCCAATGTGGCTACGGGTGCGTTCCTCAACGCCGAAGCCGAGAGCATCATCGCCACTTCGTCATCGAAGAAAACCATTTTCATCCAGAAAAATATCAAAGTAGAGAGCAGTTCGTCCGAAGAAAATACCGTGGATCTTTACAAAGTGTCCTTTGTCAAGGGAAAGTCTTCGTACTCACTATTACCGATGAAGAAAGTCGAGACGAAAACAACTACGCCCAACAAAACTAATCCACAAATTGAACAAAAATTTATTTGCGACGAGTGCGATTTGAAGTTCACAACAGAAGTTCGACTCAAGGCTCACAAATCGACTCACAAACCGCTGGATAAATTATCAAGATCTCACGAGTCAGCAGCTTTCACGCCCAAGTTGCGCAGAAAACAATCCGTTAAGACATTCGATGCAATGGGTATTGAGGATGCGGTGCATGAATTGAAAGAAATTGACATCAGGGATATGGTACAGACGTTCAACTGTCCATCTTGTGAGTTTAGCACAAATGACCGGGACATAATGCGGGACCATTTCTCAACGGTGCATTGCATGAAACCTTTGGAGATGAAACTCGACTCTGAGGATCAGCAAGTTCTGGACGACGGGGTGACTATCGAAAAGAGTGAACATTTCGTCGAAGAGTACGCCGAGGTAGAACATCTGGACCAGCTGAGCTGTGCACAGTGTGGTTTCACCTGCAATACTCAGGACGACCTGGACTTCCACGCGTGTGAACTCGAAGACGAACAAGCTTCGTTCAGTTGTCACCTGTGTACCTACGAGTGCCTTACGCGCACAGGTCTGCAAAGTCACATCACTCGCAAGCACAGACCGAAACCCGAAAAAAGTGCCAGCAACAAGTACGAGTGTGACGAGTGTGAGTTCCGTAGTGACAATAAAAATTCGCTTTATTCGCACAAACGTCGACACCGAGCTGGTAAACTCAACGTCAGTGTCAAACGTAGCGAGAACAAATTTTTCTGCAACGAATGCGATTTCGCTGCCAGGGCCAAAAGTGCCTTGTACTTGCACATTCACAGGAGACATAAGCTGTCGGAGTCGAAACCCGAGAGACCGGAATTCTACAGCTGCGAGCACTGTGACTACACCAACAAAAACAAATACGAAATGAAGGTCCACGTGATTAGGAAGCACACGAATGAATATCCACACGAATGCAAAGACTGTGGGAAGAAGTACAAGATCAAAGGTGATCTCACTAATCACATAAGATTCCAACATAGAGAGCAGCCCATCATCTGCGATGTCTGTGGAAAGACTTGTGGTAATAGCAACTCGCTTTACGTTCATCAAAAATTTGCTCATTATAAAGCCGAATTCGAGTGTCCGATCTGCCACAGAAGAATGGTGAGTCAGGCGAATTTGGACGAGCACGTATTGAAGCAACACGAGCAAAGAGAAGATGCCGTGTGCGAGGAGTGTGGCAAGACTTTTACGAGACAAAGCAGATTGAAAATCCACATGAGGATTCACACGGGTTTAAAGCCTCACGCTTGTAAAATTTGCGGAAAGGCCTTCAGCAGAAAGACTGCTTTAAGGCAGCATCTGCTCATTCATACCGGACAGAGACCCTATGTCTGCGACATTTGTGGAAAAGCCTTCACGCAAAAACCTGGACTGATCAGTCACAGGAAAAGCCATCCGGGATCGCATCCACCGCTGCCTAGAGTCACTATTGATCACGTACTGTCGGATTTGCTAACCGAAGGAGACGGCGAATGTTAA
- Protein Sequence
- MKFKIKMIPDRRGHSRWTRKQSIISRIRVRNALDLMDLTPPPPQADEDPPYEPPTKTISKCSDKATTKKKRAMSSKVAKKKDSECDSENEKETVDTPKDTKSRLKTTAPGKTSKKKAVSKSKSSVKKSVKPKDEEPEEIKRLYSKLKTGYFVCVACSDKFTHRYKVRAHIRLKHQPRQTFQCPECPLIYKSKYQLKIHRNTHLENKSDFMFFCDKCDYRALSKNNLKHHEIRKHSNDYPFECDHCKKRFKVKMDLKFHLGTHSDSQHMCDICGKMYSSPESLYKHRRVIHLNEYKFKCPKCWQKLLSQESLDHHLEKHKVLHSCDECDLKFTKKNYVTRHKKRVHMVEKNKLCPVCGKSFVCMATLRVHYLTHAKVKPYMCNVCGLSFTQRSSMMLHWKRKHPDAEAPPPPVILTNFFDSINAEVQKLAVPVMESSSNDASSNVATGAFLNAEAESIIATSSSKKTIFIQKNIKVESSSSEENTVDLYKVSFVKGKSSYSLLPMKKVETKTTTPNKTNPQIEQKFICDECDLKFTTEVRLKAHKSTHKPLDKLSRSHESAAFTPKLRRKQSVKTFDAMGIEDAVHELKEIDIRDMVQTFNCPSCEFSTNDRDIMRDHFSTVHCMKPLEMKLDSEDQQVLDDGVTIEKSEHFVEEYAEVEHLDQLSCAQCGFTCNTQDDLDFHACELEDEQASFSCHLCTYECLTRTGLQSHITRKHRPKPEKSASNKYECDECEFRSDNKNSLYSHKRRHRAGKLNVSVKRSENKFFCNECDFAARAKSALYLHIHRRHKLSESKPERPEFYSCEHCDYTNKNKYEMKVHVIRKHTNEYPHECKDCGKKYKIKGDLTNHIRFQHREQPIICDVCGKTCGNSNSLYVHQKFAHYKAEFECPICHRRMVSQANLDEHVLKQHEQREDAVCEECGKTFTRQSRLKIHMRIHTGLKPHACKICGKAFSRKTALRQHLLIHTGQRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVTIDHVLSDLLTEGDGEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -