Basic Information

Insect: Apocrypta bakeri
Gene Symbol: Sall1
Assembly: GCA_018906985.1
Location: JACCIA010000001.1:17600455-17605584[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.47 34 5.0 2.6 2 23 197 219 196 219 0.96

2 24 0.00035 0.025 14.8 0.1 1 23 264 287 264 287 0.97

3 24 0.5 36 4.9 2.2 1 19 299 317 299 318 0.89

4 24 2.8e-06 0.0002 21.4 1.4 1 23 332 354 332 354 0.97

5 24 0.0078 0.56 10.6 0.1 1 23 360 382 360 382 0.95

6 24 6.9e-05 0.0049 17.0 0.2 1 23 388 411 388 411 0.95

7 24 0.00012 0.0088 16.3 2.9 1 23 605 628 605 628 0.95

8 24 3.1e-07 2.2e-05 24.4 0.4 1 23 634 656 634 656 0.99

9 24 0.64 46 4.6 10.0 1 23 665 688 665 688 0.97

10 24 0.0034 0.24 11.7 1.1 1 23 694 716 694 716 0.96

11 24 2.5e-05 0.0018 18.4 1.3 1 23 721 744 721 744 0.97

12 24 0.01 0.75 10.2 2.2 1 23 750 772 750 772 0.98

13 24 0.00036 0.026 14.8 2.3 1 23 776 799 776 799 0.97

14 24 0.00078 0.056 13.7 0.8 3 23 807 827 806 827 0.99

15 24 0.00014 0.01 16.0 3.3 1 23 833 856 833 856 0.97

16 24 0.099 7.1 7.1 5.5 1 23 1106 1129 1106 1129 0.97

17 24 8.2e-06 0.00059 19.9 0.7 1 23 1135 1157 1135 1157 0.99

18 24 0.54 39 4.8 1.7 1 23 1166 1189 1166 1189 0.93

19 24 0.004 0.29 11.5 4.1 1 23 1195 1217 1195 1217 0.96

20 24 4.3e-06 0.00031 20.8 1.2 1 23 1222 1245 1222 1245 0.96

21 24 0.00056 0.04 14.2 0.3 1 23 1251 1273 1251 1273 0.99

22 24 0.00041 0.029 14.6 3.1 1 23 1277 1300 1277 1300 0.97

23 24 0.0024 0.17 12.2 0.7 3 23 1308 1328 1307 1328 0.98

24 24 0.00014 0.01 16.0 3.3 1 23 1334 1357 1334 1357 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.47	34	5.0	2.6	2	23	197	219	196	219	0.96
2	24	0.00035	0.025	14.8	0.1	1	23	264	287	264	287	0.97
3	24	0.5	36	4.9	2.2	1	19	299	317	299	318	0.89
4	24	2.8e-06	0.0002	21.4	1.4	1	23	332	354	332	354	0.97
5	24	0.0078	0.56	10.6	0.1	1	23	360	382	360	382	0.95
6	24	6.9e-05	0.0049	17.0	0.2	1	23	388	411	388	411	0.95
7	24	0.00012	0.0088	16.3	2.9	1	23	605	628	605	628	0.95
8	24	3.1e-07	2.2e-05	24.4	0.4	1	23	634	656	634	656	0.99
9	24	0.64	46	4.6	10.0	1	23	665	688	665	688	0.97
10	24	0.0034	0.24	11.7	1.1	1	23	694	716	694	716	0.96
11	24	2.5e-05	0.0018	18.4	1.3	1	23	721	744	721	744	0.97
12	24	0.01	0.75	10.2	2.2	1	23	750	772	750	772	0.98
13	24	0.00036	0.026	14.8	2.3	1	23	776	799	776	799	0.97
14	24	0.00078	0.056	13.7	0.8	3	23	807	827	806	827	0.99
15	24	0.00014	0.01	16.0	3.3	1	23	833	856	833	856	0.97
16	24	0.099	7.1	7.1	5.5	1	23	1106	1129	1106	1129	0.97
17	24	8.2e-06	0.00059	19.9	0.7	1	23	1135	1157	1135	1157	0.99
18	24	0.54	39	4.8	1.7	1	23	1166	1189	1166	1189	0.93
19	24	0.004	0.29	11.5	4.1	1	23	1195	1217	1195	1217	0.96
20	24	4.3e-06	0.00031	20.8	1.2	1	23	1222	1245	1222	1245	0.96
21	24	0.00056	0.04	14.2	0.3	1	23	1251	1273	1251	1273	0.99
22	24	0.00041	0.029	14.6	3.1	1	23	1277	1300	1277	1300	0.97
23	24	0.0024	0.17	12.2	0.7	3	23	1308	1328	1307	1328	0.98
24	24	0.00014	0.01	16.0	3.3	1	23	1334	1357	1334	1357	0.97

Sequence Information

Coding Sequence: ATGGAAAATCTAGAGGCCGATTCGACATCTGCTCCAAAATGCTCGACAATTGAAAACCCGAAAGAAATTGCGGCTGCAGATGAGGCGAAAAACAACGACAAAGTTGAAGAAGCATTACCCGAGATTATCCGAACTTTGGAACTTCGATCCAGAGAACCGAAGGCGTTAAAGGCTGCAGCCACCGAAGATAAACTAGTCAATCCAATCGTCAGCAGTACGTCAAACGCCGATCAGTTCAATTCGATCCGATTCAATGATTTGCCGTCGCCCGAGAAAACTTATTTTCTTCGTGGTCTACCTACCAAACCCACCTCTACTTCTAGGGACAACGAGGATCTCGTATCGGATCTTAATTTCTACAAGCGAATCTCTAACGGTAGTTACAGCTGTGAGCTCTGTTCCGACAAGAAGATCGAAAACATACGCAAAAATAAAACTCAGATAATTCGCCACCTTCTTCGTGCTCATACCCACTGTCTGGTCTACGAGTGCCCTTGCTGTCAGCTGACTTTCGATGAAACCTCGGTTTTCGATGATCACAAACGAGATGAACACTCGAACTTCGAGAAGATCAAAGTGAAGTTCGTTCAATGCGGCAGATGCGAACACCAGAGCAAAAATAAAAATCTGCTGAGACTGCACTTGCTGAGAAAACACGCTGTTCAGCATAGATTCGTCTGCAAATGTTGCGCCAAATGCTTCAAAACCTGGAAGGTCAAGCACGATCACGAGAAAACAATGGAACAAAAGAAAAAGAAGAAAGCGACGAAAAAAGTTCACAGACGAGAATTCGTCTGCGACAAATGCGAGAAGATTCTGGCGCCAAAGACCGAACTTATCAAGCATATGAAAGTTGTTCATTCGCAGGACTTTAAGAAGCTAAACAAGGCGCTTTACGAATGTTCGCATTGCACGAAATTCTTCCTCACACGCCAGTCTATGTTAAAACACTCACCGATCTGTCATAAACCTTTGGAAAACGATGCAACTGGTTTCTCTTGTCCGGATTGCGACAAACGGCTTTCCAGTAAAGACCATCTGAAGAAACACGCTTTGGTTCACAGTGGCGAGCGACCACATATTTGTCCTGAATGTGGACAAGCTTTTGCTCTGCTTAATACAATGAAAGTTCATGCGCTATCGCATTACAATATAAAGCCATACTCGTGCGATATTTGTGGGTTAAACTACTCACAAAGATCAGCTTTGATGACCCACTGGAAGGGCAAACATAAGAATTTACCGGCACCTGGACCGGTTGAAATTCATCAATTTTTCGATCACGAGGGCAAAGTTATTATACCTTTGTCAATAAAGAATCGTTCTTCTGCTAAACCACTAACAGCAGAGATATCGAATGAATTATATAAATCAACTTCGAAGATAAAAAACTCCGAAAACAGTAGCTCTGAAACGATATCTGACTCTGAATCTGACTTCGATATCGATTCAGACTTCGATGTCGATTCAGACTCCGATTTCGATTCTTACTGTAAAAACAAGTTAAAGAAGACTGCGAATCGGTCAAATACTAAGAAACCTCGACTAAAACGTAATATATCCGTTAAAACCCAGAGAGCGAAAAGTAAACTTCAGTCCAGGCAAGCGGAAGAGAAAGGTTCTTTAAAAAAAACCGAACCTACCAAAACGAAGAAAAGAGCTTGTACGAACAAATCCGAGTTAACAAAAACGAGAGAGAAAAAGTCTGAATCTATAAAAACAGAGGATAAAGATCCTTCAACGCGTCTCGACAACTCTAAACAGAAGTATGTGGACGTCGACGACCGTTTTTCGAAAACCAAAAATGACGACTACTTATGCAAAGTCTGCAACAAATTTTTTAAATATAGGTCTAGTGTGAAATTGCACATTCGAAGTAAGCACGAGCCACGACAGTTTTATAAATGCCCGGAATGCCCAAAGGTTTACAAATCGAAATATCCATTACAAACGCATATGAACATTCATCGAGAAAACAAAAGTGATCTATTGTTTTATTGCGATCAGTGCAACTACAGCTCAGTGTCCAAACACTGTCTCAAACATCACAAGAACAGAAAGCATACCAACGAATACCCATTCGAATGCGATCTCTGTAAAAAACGATTCAAAGGCAAAGCCGAGCTCAAGTTCCATCTAGGAACGCACGGTGATTCTGAGCACATGTGTGACATCTGCGGTAAAATGTACACCAGTGAAGAGTCGATGCTGAAGCATAGGCGAACTATCCACATTGTCCAACGGAATTTCAAATGCACAAAATGTTGGATGAAGCTACAGAGCCAGGAGAGTTTGGAACACCATCTCGAATCTCACAATATCACGTATAACTGCGATATTTGTGACCTGAAGTTCAGTAAAAAATATTATATGGTTCGGCATAAAAAACGCGTTCACTTGGTGGAAAAAAATAAACTCTGCCCAGTCTGCGGTAAGCGTTTCGTTTGTAACGCTTCGTTGAGAGTACACTACTTGACGCATTCGAAAGTAAGACCATACATGTGTAATGTTTGTGGATGCAGTTTTACGCAACGCTCCTCGATGATGCTTCATTGGAAGAAAAAACACCCTGATGCAGGCTCGCCACCAGCACCAGTCATCCTCACGAACTTCTTTGACGAAATGAGCATCGAAGTGAAGAATCTCGTCGAGCCCACCATTGGGACGAAAGGGCAATCTCGTTGGAGCCGCAAACAAAGCATCATTTCCAGAATACAGAAACAATCAACTTCTGAGATTGGAAAGTCAACTTCATCGACTTCGCCTAAAAATACCTCTTCCTATAAATCTTTATCCAAAACAACGAAGCTCTCGGAAAAACCAACTTCTAAGAGAAAAAGTTCGGTACCACTGAAGGTCTCCGAGAAAGAGATTTCTGACTTGGATTCTGACGAGGACTATCCTGAAAAGAGGAAGAAAAAATCGACCAATCATTCGAAAACTAAAAAGCCTCGTCTCGAGACTACGACGTCTGTTAAGGCACTAAAAAATAAGGCAATTTCTCAGTCTAAAAAAGCGAAGGTAAAAGCTTCTTCTGTAGAATCAGAGTCGAAGAAAACCAAAAAGAAAGTTTCTTCGGATGGTTCTGAATCGAAGAGAGCGAAGAAGAAAGTTTCTAAAGAAGAATCCGAGAACAAAATGATAAACACGAATGATTCCCCCGAGGAACCCGAGTCTACTACAATAAGAGAGAAGGATTCATCCGAAACGGATGAATTTAAAAAACCGAGGACAAAATCTACCAAAAAATCCGGCGATTCAAAGTCGAAGAAAAAGGATAGCGATGCTGGCTTTTTTCGAAATTCAAAAGGCCTCTTTGTCTGCAAATTCTGCACCCAGAAGTTTGAACATCGTTTTAAAGTTAGACTGCATATTCGAAATAAACATCAACCTCGTGAGGTTTTTAAATGTCCATATTGTCCTCAAACATACATGTCCAAGTATCCGCTGAACGCACACATGAACAAACACGAAGAAACAGATAGTAAATACGTGTATCTTTGCTCGAAATGCGATCATCGCGCCATGTCGAAAAACTCGCTAAACGTTCACGAGATAAGAAAGCACTCGAATGATTATCAATTCGAATGCGATCACTGCAAGAAACGATTCAAGATTAAATCAGATCTCAAATTTCATCTTGGAACGCACAGTGATTCCCAACACATGTGCGACATTTGTGGAAAAATGTACACCAGTGTGGACTCGCTGAATAAACACAGGCGTATGATCCATATTGTTCAGAGGAACTTCAAGTGCCCGAAATGTTGGATGAGAGTACAGACTCAAGAGAGCTTAGACCGCCATATCGAAACGCATAATATCATGTACAGCTGTGATATTTGCAACCTCAAGTTCACGAAAAAATACTACGTTACTAGACATAAAAAGCGCGTCCACTTAGTGGAAAAGAACAAGCTTTGTCCAGTTTGTGGAAAACGTTTCGCTTGCAATCCTACACTCAGAGTTCACTACTTGACACATTCTAAAGTCAAACCGTACATGTGCAACGTCTGTGGTTGCAGTTTTACTCAACGTTCGTCGATGATGCTTCACTGGAAGAAAAAACATCCGGATGCTGAGGCACCACCACCACCTGTCACACTTGCCAACTTTTTCGATGCAATGGACAACGAAGTGCAAAGGCTCGTTGAGCCGGTAATCGCAACTTGA
Protein Sequence: MENLEADSTSAPKCSTIENPKEIAAADEAKNNDKVEEALPEIIRTLELRSREPKALKAAATEDKLVNPIVSSTSNADQFNSIRFNDLPSPEKTYFLRGLPTKPTSTSRDNEDLVSDLNFYKRISNGSYSCELCSDKKIENIRKNKTQIIRHLLRAHTHCLVYECPCCQLTFDETSVFDDHKRDEHSNFEKIKVKFVQCGRCEHQSKNKNLLRLHLLRKHAVQHRFVCKCCAKCFKTWKVKHDHEKTMEQKKKKKATKKVHRREFVCDKCEKILAPKTELIKHMKVVHSQDFKKLNKALYECSHCTKFFLTRQSMLKHSPICHKPLENDATGFSCPDCDKRLSSKDHLKKHALVHSGERPHICPECGQAFALLNTMKVHALSHYNIKPYSCDICGLNYSQRSALMTHWKGKHKNLPAPGPVEIHQFFDHEGKVIIPLSIKNRSSAKPLTAEISNELYKSTSKIKNSENSSSETISDSESDFDIDSDFDVDSDSDFDSYCKNKLKKTANRSNTKKPRLKRNISVKTQRAKSKLQSRQAEEKGSLKKTEPTKTKKRACTNKSELTKTREKKSESIKTEDKDPSTRLDNSKQKYVDVDDRFSKTKNDDYLCKVCNKFFKYRSSVKLHIRSKHEPRQFYKCPECPKVYKSKYPLQTHMNIHRENKSDLLFYCDQCNYSSVSKHCLKHHKNRKHTNEYPFECDLCKKRFKGKAELKFHLGTHGDSEHMCDICGKMYTSEESMLKHRRTIHIVQRNFKCTKCWMKLQSQESLEHHLESHNITYNCDICDLKFSKKYYMVRHKKRVHLVEKNKLCPVCGKRFVCNASLRVHYLTHSKVRPYMCNVCGCSFTQRSSMMLHWKKKHPDAGSPPAPVILTNFFDEMSIEVKNLVEPTIGTKGQSRWSRKQSIISRIQKQSTSEIGKSTSSTSPKNTSSYKSLSKTTKLSEKPTSKRKSSVPLKVSEKEISDLDSDEDYPEKRKKKSTNHSKTKKPRLETTTSVKALKNKAISQSKKAKVKASSVESESKKTKKKVSSDGSESKRAKKKVSKEESENKMINTNDSPEEPESTTIREKDSSETDEFKKPRTKSTKKSGDSKSKKKDSDAGFFRNSKGLFVCKFCTQKFEHRFKVRLHIRNKHQPREVFKCPYCPQTYMSKYPLNAHMNKHEETDSKYVYLCSKCDHRAMSKNSLNVHEIRKHSNDYQFECDHCKKRFKIKSDLKFHLGTHSDSQHMCDICGKMYTSVDSLNKHRRMIHIVQRNFKCPKCWMRVQTQESLDRHIETHNIMYSCDICNLKFTKKYYVTRHKKRVHLVEKNKLCPVCGKRFACNPTLRVHYLTHSKVKPYMCNVCGCSFTQRSSMMLHWKKKHPDAEAPPPPVTLANFFDAMDNEVQRLVEPVIAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -