Basic Information

Insect: Apocrypta bakeri
Gene Symbol: -
Assembly: GCA_018906985.1
Location: JACCIA010000001.1:17616305-17621029[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 2.7e-05 0.0019 18.3 1.1 1 23 47 69 47 69 0.98

2 26 0.052 3.8 8.0 0.3 1 23 74 97 74 97 0.97

3 26 5.8e-05 0.0042 17.3 6.2 1 23 102 124 102 124 0.98

4 26 0.0003 0.021 15.0 0.8 1 23 141 164 141 164 0.97

5 26 0.077 5.6 7.4 3.6 1 23 173 195 173 195 0.97

6 26 0.013 0.95 9.8 1.7 2 23 202 222 202 222 0.97

7 26 4.3e-05 0.0031 17.7 1.6 1 23 228 250 228 250 0.99

8 26 9.3e-05 0.0067 16.6 3.6 1 21 256 276 256 278 0.95

9 26 0.0028 0.2 12.0 3.5 1 23 315 337 315 337 0.97

10 26 6.9e-05 0.005 17.0 1.8 1 23 343 365 343 365 0.98

11 26 1.6e-07 1.1e-05 25.4 0.1 1 23 371 393 371 393 0.98

12 26 0.00065 0.047 14.0 3.5 3 23 401 422 400 422 0.96

13 26 6.2e-06 0.00045 20.3 2.5 1 23 427 449 427 449 0.97

14 26 1.1e-05 0.00082 19.5 1.7 1 23 458 480 458 480 0.98

15 26 3.2e-06 0.00023 21.2 1.0 1 23 486 508 486 508 0.97

16 26 5.7e-05 0.0041 17.3 1.3 2 23 515 536 514 536 0.97

17 26 1.6e-05 0.0011 19.0 2.4 1 23 643 665 643 665 0.98

18 26 0.0003 0.022 15.0 3.6 2 23 671 692 670 692 0.97

19 26 0.0013 0.095 13.0 0.1 1 23 697 719 697 719 0.98

20 26 2.8e-06 0.0002 21.4 1.3 1 23 727 749 727 749 0.98

21 26 0.33 24 5.4 3.1 1 23 755 778 755 778 0.94

22 26 0.00035 0.025 14.8 0.2 3 23 791 811 789 811 0.96

23 26 7e-06 0.00051 20.1 2.0 1 23 817 839 817 839 0.96

24 26 3.9e-08 2.8e-06 27.3 0.2 1 23 845 867 845 867 0.98

25 26 5.6e-07 4e-05 23.6 1.0 1 23 873 895 873 895 0.98

26 26 0.00064 0.046 14.0 1.7 1 21 901 921 901 922 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	2.7e-05	0.0019	18.3	1.1	1	23	47	69	47	69	0.98
2	26	0.052	3.8	8.0	0.3	1	23	74	97	74	97	0.97
3	26	5.8e-05	0.0042	17.3	6.2	1	23	102	124	102	124	0.98
4	26	0.0003	0.021	15.0	0.8	1	23	141	164	141	164	0.97
5	26	0.077	5.6	7.4	3.6	1	23	173	195	173	195	0.97
6	26	0.013	0.95	9.8	1.7	2	23	202	222	202	222	0.97
7	26	4.3e-05	0.0031	17.7	1.6	1	23	228	250	228	250	0.99
8	26	9.3e-05	0.0067	16.6	3.6	1	21	256	276	256	278	0.95
9	26	0.0028	0.2	12.0	3.5	1	23	315	337	315	337	0.97
10	26	6.9e-05	0.005	17.0	1.8	1	23	343	365	343	365	0.98
11	26	1.6e-07	1.1e-05	25.4	0.1	1	23	371	393	371	393	0.98
12	26	0.00065	0.047	14.0	3.5	3	23	401	422	400	422	0.96
13	26	6.2e-06	0.00045	20.3	2.5	1	23	427	449	427	449	0.97
14	26	1.1e-05	0.00082	19.5	1.7	1	23	458	480	458	480	0.98
15	26	3.2e-06	0.00023	21.2	1.0	1	23	486	508	486	508	0.97
16	26	5.7e-05	0.0041	17.3	1.3	2	23	515	536	514	536	0.97
17	26	1.6e-05	0.0011	19.0	2.4	1	23	643	665	643	665	0.98
18	26	0.0003	0.022	15.0	3.6	2	23	671	692	670	692	0.97
19	26	0.0013	0.095	13.0	0.1	1	23	697	719	697	719	0.98
20	26	2.8e-06	0.0002	21.4	1.3	1	23	727	749	727	749	0.98
21	26	0.33	24	5.4	3.1	1	23	755	778	755	778	0.94
22	26	0.00035	0.025	14.8	0.2	3	23	791	811	789	811	0.96
23	26	7e-06	0.00051	20.1	2.0	1	23	817	839	817	839	0.96
24	26	3.9e-08	2.8e-06	27.3	0.2	1	23	845	867	845	867	0.98
25	26	5.6e-07	4e-05	23.6	1.0	1	23	873	895	873	895	0.98
26	26	0.00064	0.046	14.0	1.7	1	21	901	921	901	922	0.96

Sequence Information

Coding Sequence: ATGTTTTCCTCTTCTGTTGTGTACAGAGTTAGTAAATGCCAAGAAGATCCACTGGCAATTATGAAATACAATGAAAGATCCGATGCTAAACGTCAAAGTTCCAAGATCATTGACCAATTCCATCAACCACCACAGCAATTCGAGTGCAATTATTGCTCGCAACCTTTCTCCAAGAAGCACGCTTTAGCACTGCACGTCCGGATTCACACAAAAAAAAGTTATTACTGCAATTTTTGCGGACAACCCGAAGTCTCTGAAAACTCCCTCGGTAAACACTTACGCACTTACCACTTGAATCTTAGCTTCAATTGTTCGCACTGCAAGAAGTGCTTCAATACTGCTGGTAGCCTGAGATTGCACAAGCGCGTACACGACGTGAAGAAACATCACAAGGAGGAGAAATTGTCCAAAGATAAGAATTACACCTGTTTGCTCTGTGAGATGAGTTACAGATCGGAAGGATATCTCAAAAATCATATGGCGAAGAAACATGCTGATAATCCACAAGATCGGTCGTTTCGCTGTGAACAATGCGGTTTCGTCACTTTTTACAAAAATTGCATGAAAAAGCACGTATTGATTCACACAGCAGATTACAAGGCTACCTGTCATGTTTGTGGGAAAAAAATGGTCAAGTCCTATTTGTCTGAACACATGAGAATCCATACCGGCGAGAAGCCTTACGTGTGTTGTTACTGCGGGAAGATGTTCGGTGGGAGAAAATATTTGATAGTTCACGAGAGGACACACACCGGGGAGAAACCTTATCAGTGTCGGCTGTGTGAAAAGTCATTCACTCAGGAGTCTACGTTAAGGACACACATTCAGTGCCACTTAAAGAACGAGGAGAGGAATCTTTTGAGCCAAGATCAGATTAACAACGATACAGAGTCGGGAAAGCTCGTTGAAAAAGATAACCCGGACTCAGACGATCAAGAAGGTTATCAATGTCAACTCTGCTCGAAGTGTTTCAAATCCAAGAACCTGTACGATGGTCACCTCATATCTCACAGCGATGCTCGGCCTCACAAGTGCGACATATGTCTGAAAGCCTTCAAGCGCACCAACACTTTGGCTGTTCATCGGCGCATCCATACCCGTGAGCGCAACTTCGTCTGTGACGTTTGCGGTCGAGCTTTTGTCCAAGCATCCCAATTGGCTACGCATCAACGGCGACACTTCGACCGTTTCACGCGACACTGCACTCTCTGTGACAAAGGTTTTTTCACCAACGCAGAGCTACACAGCCACATGAACGTAAAACACGGGGCCAATCAGCACGTCTGCGAGATCTGCAGGAAATCTTTTCCAAACAATCACTCGCTGGCAAGACACGCCAGGAGTCACGATCCGGATTTTGAACCAGTCAGACACCAGTGCGAATTTTGCGGCAAAACCTTCGTTTATAGAAACTCTCTGGTGGCGCACGTCAAGTCCCACACCGGAGAGAACAAATATGACTGTCATCTCTGCGGAAAAAGCGTGTCGTCCAAGGGCTCGCTACAGGACCACCTAAGACTTCACGGTGGTGAGAAGAATCTGGTCTGCGACGTGTGCGGAAAAGCTTTTCACAAAAGGACTACACTTGTTGTTCACAAGAGGACGCATACCGGTGAAAAGCCATTCACATACCCCCAACGAAAATGCCTGGATGGCAAGCGCACTTCTCCAGATCCTACGAGCGTATTCACGAAAAAGAAGCAGCAGATGATAAAGCTAGAGGTCCAATCACCCGTTATCGTGAAAATCGAGGAGCCCGACCACTTCGTACTCGACGACGACCTGCCCCTGGCCTATTTCTGTAAGCCCTGCAATATTTTTTGCGCCTCCCAGGCTCATCTAGATACTCACAACTTCAGTGTTCATCGCATGGACGTGGGCGAGGACAAGGAGATGTTGAAGAAGAAAAAGAGGATCAAAGAAATTTTTACCTGTAACATTTGCGGCAAGGCATTCCAGCGAAAAAATAGGTACCAAAAGCACCTCTTGCGACACAAAGCAGGTGAACTCAGCTGCAAGCATTGCCCGAAGAAATTCCGACTTATCCGAGATCTCACGCGCCACGAGAAGACGCATTTCTTGCCAAGTTACGTCTGCAAAGAATGCGACTACGAGACAACAGTCCTGGCAGCTCTGAGTATTCACATGACTCGGCACAACGACAAATCCGAGCTACCCTTCAAATGCCAGGAGTGTGACAAGAGATTCAGGAAAGCTAACGAACTTCAAGAACACTACAACATACACTCGGGTGAAAAACCTTTCGTTTGCCAAGCCTGCGACCAGTCGTTCTTCCTTCGCAGACAGCTCTCGGCACACTGTAGAAGAACGCACCCGGAACTCAAGTCACAGAAGGTCACCAGTACTGCCTGCGACATTTGCGGTAGGGTACTGGCTACCAAACGCTCGCTTGTCAGGCATAAAGAGAGTCACAATCCAACGAAGCTTTATCTCTGCGACTTCTGCGGTAAAAGTCTCAGTAGCGCTGAACATCTGAAAAAACACAGAAGGATTCATACTGGAGAAAAACCTTACGTGTGCGACATCTGTGGCAAGGGATTTACGGATTCGGAAAATCTTCGGATGCACAGGAGAATTCATACTGGTGAAAAACCCTATAAGTGCGATCAGTGTCCGAAAGCTTTCAGTCAGAGATCCACACTGACGATACACAAAAGAGGACACACTGGGGAAAGACCTTACGTTTGCCAAATTTGTCATCGAGGATTTTCATGCCAAGGAAATCTCACTGCCCATCAAAAATCTACGTGTGTCTGA
Protein Sequence: MFSSSVVYRVSKCQEDPLAIMKYNERSDAKRQSSKIIDQFHQPPQQFECNYCSQPFSKKHALALHVRIHTKKSYYCNFCGQPEVSENSLGKHLRTYHLNLSFNCSHCKKCFNTAGSLRLHKRVHDVKKHHKEEKLSKDKNYTCLLCEMSYRSEGYLKNHMAKKHADNPQDRSFRCEQCGFVTFYKNCMKKHVLIHTADYKATCHVCGKKMVKSYLSEHMRIHTGEKPYVCCYCGKMFGGRKYLIVHERTHTGEKPYQCRLCEKSFTQESTLRTHIQCHLKNEERNLLSQDQINNDTESGKLVEKDNPDSDDQEGYQCQLCSKCFKSKNLYDGHLISHSDARPHKCDICLKAFKRTNTLAVHRRIHTRERNFVCDVCGRAFVQASQLATHQRRHFDRFTRHCTLCDKGFFTNAELHSHMNVKHGANQHVCEICRKSFPNNHSLARHARSHDPDFEPVRHQCEFCGKTFVYRNSLVAHVKSHTGENKYDCHLCGKSVSSKGSLQDHLRLHGGEKNLVCDVCGKAFHKRTTLVVHKRTHTGEKPFTYPQRKCLDGKRTSPDPTSVFTKKKQQMIKLEVQSPVIVKIEEPDHFVLDDDLPLAYFCKPCNIFCASQAHLDTHNFSVHRMDVGEDKEMLKKKKRIKEIFTCNICGKAFQRKNRYQKHLLRHKAGELSCKHCPKKFRLIRDLTRHEKTHFLPSYVCKECDYETTVLAALSIHMTRHNDKSELPFKCQECDKRFRKANELQEHYNIHSGEKPFVCQACDQSFFLRRQLSAHCRRTHPELKSQKVTSTACDICGRVLATKRSLVRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRIHTGEKPYKCDQCPKAFSQRSTLTIHKRGHTGERPYVCQICHRGFSCQGNLTAHQKSTCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -