Abak009038.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apocrypta bakeri
Gene Symbol
ZNF236
Assembly
GCA_018906985.1
Location
JACCIA010000004.1:15969299-15981446[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 8.7e-07 6.2e-05 23.0 0.9 1 23 177 199 177 199 0.98
2 26 0.0011 0.08 13.2 1.1 1 23 205 227 205 227 0.97
3 26 3.4e-06 0.00024 21.2 1.1 2 23 233 254 233 254 0.98
4 26 0.0023 0.16 12.3 1.3 1 23 260 282 260 282 0.97
5 26 0.00091 0.065 13.5 1.4 2 23 294 315 294 315 0.96
6 26 2.5e-06 0.00018 21.6 0.3 1 23 336 358 336 358 0.99
7 26 0.00018 0.013 15.7 0.9 1 20 364 383 364 386 0.96
8 26 1.9e-05 0.0014 18.8 0.3 1 23 392 415 392 415 0.97
9 26 0.00057 0.041 14.2 2.7 1 23 424 447 424 447 0.98
10 26 1.1e-06 7.8e-05 22.7 0.8 1 23 540 562 540 562 0.99
11 26 5e-05 0.0036 17.5 2.5 1 23 568 590 568 590 0.97
12 26 0.0012 0.086 13.1 0.8 1 22 596 617 596 618 0.91
13 26 1.4 1e+02 3.4 2.1 1 23 622 645 622 645 0.94
14 26 0.0025 0.18 12.1 5.7 1 23 700 722 700 722 0.98
15 26 2e-07 1.4e-05 25.0 0.7 1 23 728 750 728 750 0.98
16 26 0.00013 0.0092 16.2 3.5 1 23 756 778 756 778 0.98
17 26 0.00023 0.017 15.4 5.7 1 23 784 806 784 806 0.97
18 26 1.1 76 3.9 0.8 2 23 1098 1119 1097 1119 0.83
19 26 3.6e-06 0.00026 21.0 5.2 1 23 1125 1147 1125 1147 0.99
20 26 0.0032 0.23 11.8 3.7 1 23 1153 1175 1153 1175 0.96
21 26 1.3e-07 9.6e-06 25.6 1.7 2 23 1210 1231 1209 1231 0.98
22 26 6.7e-05 0.0048 17.1 2.7 1 23 1237 1259 1237 1259 0.99
23 26 0.00027 0.019 15.2 0.3 1 23 1265 1287 1265 1287 0.97
24 26 1.3e-06 9.2e-05 22.5 1.6 1 23 1483 1505 1483 1505 0.98
25 26 8e-07 5.8e-05 23.1 2.5 1 23 1511 1533 1511 1533 0.98
26 26 6.1e-08 4.4e-06 26.6 0.8 1 23 1539 1562 1539 1562 0.97

Sequence Information

Coding Sequence
ATGGAGGACGTAGGATTTATGAATATGCTCACTGACGACGGCACTACATTAGTGTCTGTTCACCAGAGAGACGATGGAAGTCTAGAACTGATATCAACACCAGTAACAATCATACAAAATGCACTTGATACAAGCTCTGTACAAGTGCTCAACACTGCCAGTGCAAACCTTCTATTTAATCAGATTGACATCGACAATACTTTGCCACAAATTCTTGAACAACCTTCCATTAATGTGGTAAATTTGAATAATCAACCTATACAAGTGGCCACTGACCAACAGTATCGTTGTCCAGAAATATCGAATAATTTCTTACCTGAAAATGTACAACCTGTATTAAATAAAGAAAATAGCAAAACAGCAAAAACTCTAGAAGTGGAAGAAGAGAGAAGAACTCAACAAGATGATTTAGAAGGCTCAATTGAATCCTGGAGTCTTAAAAAAGATTCACCTCTTAAACAGCATACCAATAAGAGTCTTGGAAAGTCAAAAAAACACAATAAAAATGCGAGTGGAGCGAGAATGTATTTCAAATGCGATATTTGTGGTATGGGATTTCGAAAACAGTACTTATTACAAAGGCATATGCAAGATCACGTACAAGAGAAACCTCATCATTGTCCAAAATGCCCTGCGTCATTTAATATTCCAATAAATTTCACTTTGCACATGGCAACACACAATGTAGGTGAACCTAAATGCCCACATTGTGGACGAAAATTTGCTCGCATGGCCAGTCTCAAGGCGCACATGACGGTACACGAAGTGGACGATAATCATTACTGCACCGAATGCGAAAGCGTCTTTGAAACAAAGACTCAGTTGGACGCGCACTTGAAGTTACACAACGAAAAATGGTCAGCGGAAGACTACAAGCGCAGCTGCAAGCTTTGCCGCAAGCAGTTCACTCAACCCGTTCTTTATCGTCAACACTTGCGCGATCACTACAAAATGCAAACCAAATGCCCGAAGCAAACGAAACGCGGCGTCAGACTGGGCACCGTTTACAAGTGCAGAATATGCCTGAAACCATTCGAAAAACCTAGTCAATTGGCGAGGCACATTCGAGTACACACTGGTGAAAAACCCTACAAGTGCAATCTATGCAGTCGAAGTTTTTCGCAAAAAGGTTCCGTGAGGATTCATATGTGGCAACATAATGGCATCAGGCCTTACAGCTGTTCTGTTTGCAAAGCTAAATTTAGTCAAAAAGGTAATCTTAACGCTCACGTATTACGAGTGCATAAAATCCAGGAAGGAGCGCCGATTTACCGATGCACGCGATGTCCCTGTGTTTTCAAGAAACTTGGCAGTTTGAATGGTCACATGAAGCGAATGCACGATAGCGTCGAAGAGGAGACAACCGAAGAGAACACCGAGGAGCTTCGGGAAGCACAAGAACCCGTCGTTGAACCTGACACCATTGATATGGAGACGTCGAAAGAGACGGTACCTAATGCTGAAAGCGCCAACCTGCCGCGAGACGTTGAGGACGGATTTATTCTTATGAACGAGAAGGAGCAGACGGCTGTTGTGACTCTTTTGGATAAGGTTGCCGATAATTCTAAGGGAAAGTACGTTAAGATCAAGCAGCGATTTGTAAATAATTCTAGACAGTACGAATGCGATTTTTGTTATAAAGCCTTTAAGAAGCCATCCGACCTTATGAGACACTTAAGGATACATACGCGAGAAAAACCCTTCAAGTGCAATACGTGTGATCGCACATTTACTCTTAAGTCAACATTGATGTCTCACGAAAAGCTCCATGAAAACGCTGGGAAATACAAGTGCCAAGCCTGTGATAAGTCCTTCAATACGGAGAATGCTCTTAGATCTCACGACAAAATCCACAATAAAATTCACAAGTGCATGATTTGCCTCAAGACTTTTTTGAACTTTGAACGTTTGCGAGAACATGCCTTGACTCAACACGTTGGTCGTAAGAAAACACAACTGTCACCGGAAGTGCAAAACTTGGCACCGAAAGTCGTGTTAAAGGAACCGCTGGTATTGACCGAACTGAGTGGCGGTTTACTGCACGCTCAGCCTAAGTTCGGTCGTACCAGTAAAATTGCTCATACCAAGGGTAGACCGCACAAGTGCCAGGCTTGCCCAGCTGCTTTTACAAAGCTCAGTCATCTCAAACAGCACCATAGGATGCATACTGGAGAAAGACCATTTGTCTGTGCTCTTTGTGACAGGACCTTCACTACCAATAGTGCTCTTAAGGCCCATCGGCGAACTCACGATCTGTTGAAACCTTACCAATGTACTGTATGTAATATGAATTTCTCCACATTAAGTAGCATGAAAAGGCATCACGTTACCCACAGTAATAAAAGGCCATTCATGTGTCCGTATTGTAATAAAACATTTAAAACGACGGTGAATTGTAAAAAACATATGAAACTACATAAACAAGAAATTGCTCAGCAGCAAATAGAAAATCAGAAAGAGCAAGAGCAGTCTGCAAACGTCAATGAAACACAAACAGTTATAACGACAGATCTAATCACGGCCAATAACCAACAAATGACGTTTAAGCCTATTGCTACTGATATTACACAGAACTTGAATGAACAACTTCAAATGATAAACAAGAGCAGTTTTTCTTCTGATTTGAATTCATCGCTATCGCAAAATATTCAAATTTCATGTCATCAAGGAAAGAACATATCCGTAGTAGAAAATTCTAACATAGGTTCGAATCAAACAATGCATGCCGATGAGACAGGCACCATTACCCTATCCAATTATACGGGTGATCCAACACTTACACCTGAGAGTATGAGAGTAATTGAAGAAACTTTGAATCAACAATTGTCTAACATTGGATTGAATATGGCGTTAAACAGCAGTGTTAGGCAGATTGAGGAACATAATAATACATCCACAGTTAATCGTGATCAACCAACTTTGAGTATAATTTATGATAAAAATGTGGCATCACCTTTGACCACACACCCCTTGAATACAAATGTTTTTTCTCCACAATTTGAAAGTTTTGATCTTAATCAAATAACTCTACAGGGGGACAATGGAATTAACTTAGAAATGATACAAAACAATTCACAAAACGTACCAAACATTCTACCTGGTATAATTAATCAAAATCAAACTTACAGTTTACAATTTATAAATGACGACATCTACGCAAATACGATTCTCAAGCAAAGTCAAGTAAACCAGCTAAAAGATAATAATCAGATAACTGAATTTGTGAAAGTTGCAAGCAATGAACTAGTCTGCAGCAATGCCAATAAAAATTTTGATAAAGAGAATAATCTGCAGTGCCATATATGTAAAATGGAAGAATTAAGTGCTGATGATCTGAAGGAGCATCTTAAAACTCACAAAGAAATTAAAGAATTTAAATGTACTAAATGTCATATGAAATTTCGAACTAATGCAGGTCTTAATAGGCATATGAAAACTCATGATACGCAGGAGACACACAAATGCTACGAATGTAATCAAGTATTTTCCTCGACTTTGCATCTAAGAGAACATATAACAGAACATGTGAAACACGAGTTGAAGTTGAAAAATGTTTTGGATGCTGATTCGATGCCTAAAAATATAAAAAAGAAAAGAAGTAAAGAGAGTACCAGCAGTAAGGATCAGAAATGTAAGTTTTGCCCAAAAACTTTTCGTAAACCCAGTGATCTCATAAGACATATTCGAACCCATACCGGTGAGCGACCATATCAATGTCAGTATTGCGATAAAAGTTTTGCTGTTAAATGCACGTTGGATTCCCACTTGAAAGTGCATAAAGGATCGAAGCCGTTCAATTGCTCAATATGTGATTCAGCTTTTTCTACTTCTAGTCAAGTGAAAGTGCACGAGATGTCTCACCCGCGGGAAGATACCTCAGTAACCCAAGCGACTACCATTGATTCAAGTTCAGAATTAATGAATGTTAAAAGCTCGACAGAACCAACTTGTGACACTCGGATCGTTCAAATCGTACACACAGTACCTGTCCCTCAACAATTAGAACAGCAAAATGTGAATTCCGTTAATTTCCATTCCGCGAACGTCACGATAAATCCACAAATAAGTTTTAATGCGGATGATGGATCAAGTTTATTGACATTGACCGAGAACAATCAATTGGTGGCGAATCTCGAGTTCTTGTTGGCTAATGGTTTAGTTAACATATCATCCGAAGGTTTGCAATTACCGTCAGATGAATGTATCTTACAGAAGGGTCAATCAGATCAAGAGCAATCAGATCAAACAAATGCACAAGTGATTTTCGCAAGCGAAATGCCCAATATAAATAGCCAAATTAATCAAGAAACTCAGCAAGACTTGAATCATATTCAGATGAACGATTGCATGGTTCTGTCGCTGAATGACTTCAATAATATTGTGGAAGAGAGGAATAACGAAAACGTACTAAAAGAGACTGATCCTGTGGGCTCTACAGGGCCGCGTTACGACTGTGAAAATTGTGGTAAATCGTTTTCCAAACCCTGCCAGGTTGAGCGGCACATGCGCGTACACACGGGTGAACGACCATTTAAGTGCCAATTGTGTGACAAATCGTTTTCTCAGAAATCCTCGCTACAGTTGCATGCAAAAAAGCACACTGGTGAACGGCCTTATGCCTGTCCTCACTGCGATAAAGCGTTTGCTCAAAGCGGTAATCTCCAAACCCATATTCGTCGCAAGCACAGCGTGGATACACAAACCGCAAAACAACAACAATTGATCAATGTTAGTTTCTGTGATCCCAATAAGATTCTAACTCTAGATCAACAACAACTTGTATTAGATAGGCCCCTTGGATTCGAAGATATCTCGATCGTTGAATTTCTTAACTAA
Protein Sequence
MEDVGFMNMLTDDGTTLVSVHQRDDGSLELISTPVTIIQNALDTSSVQVLNTASANLLFNQIDIDNTLPQILEQPSINVVNLNNQPIQVATDQQYRCPEISNNFLPENVQPVLNKENSKTAKTLEVEEERRTQQDDLEGSIESWSLKKDSPLKQHTNKSLGKSKKHNKNASGARMYFKCDICGMGFRKQYLLQRHMQDHVQEKPHHCPKCPASFNIPINFTLHMATHNVGEPKCPHCGRKFARMASLKAHMTVHEVDDNHYCTECESVFETKTQLDAHLKLHNEKWSAEDYKRSCKLCRKQFTQPVLYRQHLRDHYKMQTKCPKQTKRGVRLGTVYKCRICLKPFEKPSQLARHIRVHTGEKPYKCNLCSRSFSQKGSVRIHMWQHNGIRPYSCSVCKAKFSQKGNLNAHVLRVHKIQEGAPIYRCTRCPCVFKKLGSLNGHMKRMHDSVEEETTEENTEELREAQEPVVEPDTIDMETSKETVPNAESANLPRDVEDGFILMNEKEQTAVVTLLDKVADNSKGKYVKIKQRFVNNSRQYECDFCYKAFKKPSDLMRHLRIHTREKPFKCNTCDRTFTLKSTLMSHEKLHENAGKYKCQACDKSFNTENALRSHDKIHNKIHKCMICLKTFLNFERLREHALTQHVGRKKTQLSPEVQNLAPKVVLKEPLVLTELSGGLLHAQPKFGRTSKIAHTKGRPHKCQACPAAFTKLSHLKQHHRMHTGERPFVCALCDRTFTTNSALKAHRRTHDLLKPYQCTVCNMNFSTLSSMKRHHVTHSNKRPFMCPYCNKTFKTTVNCKKHMKLHKQEIAQQQIENQKEQEQSANVNETQTVITTDLITANNQQMTFKPIATDITQNLNEQLQMINKSSFSSDLNSSLSQNIQISCHQGKNISVVENSNIGSNQTMHADETGTITLSNYTGDPTLTPESMRVIEETLNQQLSNIGLNMALNSSVRQIEEHNNTSTVNRDQPTLSIIYDKNVASPLTTHPLNTNVFSPQFESFDLNQITLQGDNGINLEMIQNNSQNVPNILPGIINQNQTYSLQFINDDIYANTILKQSQVNQLKDNNQITEFVKVASNELVCSNANKNFDKENNLQCHICKMEELSADDLKEHLKTHKEIKEFKCTKCHMKFRTNAGLNRHMKTHDTQETHKCYECNQVFSSTLHLREHITEHVKHELKLKNVLDADSMPKNIKKKRSKESTSSKDQKCKFCPKTFRKPSDLIRHIRTHTGERPYQCQYCDKSFAVKCTLDSHLKVHKGSKPFNCSICDSAFSTSSQVKVHEMSHPREDTSVTQATTIDSSSELMNVKSSTEPTCDTRIVQIVHTVPVPQQLEQQNVNSVNFHSANVTINPQISFNADDGSSLLTLTENNQLVANLEFLLANGLVNISSEGLQLPSDECILQKGQSDQEQSDQTNAQVIFASEMPNINSQINQETQQDLNHIQMNDCMVLSLNDFNNIVEERNNENVLKETDPVGSTGPRYDCENCGKSFSKPCQVERHMRVHTGERPFKCQLCDKSFSQKSSLQLHAKKHTGERPYACPHCDKAFAQSGNLQTHIRRKHSVDTQTAKQQQLINVSFCDPNKILTLDQQQLVLDRPLGFEDISIVEFLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-