Abak009049.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000004.1:16037179-16039152[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-09 1.1e-05 24.8 0.1 3 39 17 54 15 58 0.91 2 2 1.9 3.2e+03 -2.3 0.0 23 31 112 120 110 120 0.84
Sequence Information
- Coding Sequence
- ATGGTTCGAAAATATATACGAAAAAGCCAGAGAAAATCATGGTCTGCAGATACCATGAAATTGGCCATTGAAGCTGTCATTCAAAAAAATTACAGTATAAGAAGAGCCTCTATGGAGCATAAGGTACCTCAAGCCACCCTGTCTAGAAAAGTAAACCAGATTCGTACTGAACCTGAAAAAGACATAGACGTTCTTGCCAATCCGTTTGGATCCAATTTTCAAACTGTTTTCAATAAAGAGCAAGAAGCAGAATTATGTCAGTTTATTCACACGCTAGAAGATCAATTTATATCATTAAATAATCTGGATATTAGACAATTGGCTTATCAAGTGGCTGAAAGGTTTAATATTCCTCATCGTTTTAATAAAAACTCGGCTGTAGCAGGAGAAGATTGGTATAGAGGATTTTTAAAGAGAAATCCAGAAGTTTGTATAAAAAAACTCGATTCATATGAAAAAGTTACAGGAATGCGAAAAGAAAAAGTTTATAAATTTTTTGACTTACTGGAAGGTATAGCTAGTAAGCATCAATTAGAAGCCAGTGATATTTATAATCTTGATGAAACTGTTATAACTTGTTCATTAAGAACTAGTAACGATACAGCTACAGTTACAGAAAATTTAGAAAATTCAAATAGTAGTCACAGTAAATTAGTCACAGCTACAGTTTGTTTTTCGGCCAGTGGTACATATTTACCGCTTATGTTGATTTTTCCATGCTCAAATAGAAATAAAAACATTATTAACAGTGCACCATTTGGAGCATGGGCTGAATTTGATCAAAGCGGACAAATGCAATTGGATATTTTTATCAATTGGTTGAGGAAATTCATATATTTTTCCAAAGCAACCAAAGACTCTCCAGTTCTTCTCATTGTAGATGGATATCGTACTTATTTGAAAAAATTGCAAGTTTTGGAATTAGCCAAGGAAAATGGTATAAATATATTATGTTTGCCACCTCATTGTACTGAAAAACTTCAGCCTATGCGACAAGATTTCATGAAGACATTGAGTGCTGCTTACACAGCTGAAGTTGCAAAATGGATGCTTTTGAATTCAGAGAGTACAGTTTCTATACAAGAAGTTTATCAATTATTTGGAAATGCATTTATGAAAGTTTCAACAGTGGCATCTCCAATTGATGGCTTTCATAATACAGGAATCTGGCCTGCAGACAGGGATAGGTTTGAAAATGAATTTATTCAAGTCACTAAAGAAGGTTTAAAAACAACTACAAAACCATTGAAGAATACTATTAATGAGACTGGTTCAATCAGCATTAGAAATGATATCATTAGTAAAAGACCTGCTGCACCAACAGTTATATCTAAAAATATAGTTCATGAACCGATTGTTGTCATTACACAAGACTGCAGTCAACCATACGTTGTGCAATCACTTGAAACAATAACTGAACAAAACCAAAATTTAATACAACAAACCATTATTCAGCAATCTTTTAACGAACCTGAAGCAATTGAGCATTATTCAATAATCGATGAACAAACAACAGAATCTGCTAGGATAGACAATCAAACTTCAGACATAGATACAATTCATGAACATGTTGAAGGTAAAGTATGTTCAGCAATTATTCCTCCAGAGGCACAGTTATCAGAAGTACAAATAGAAGACATACAAAACTTAATTAGGAGCCAAAGAAAACTACATTTTTATGTTTCTCCTTGCAAATTAAATTTGTTGCGATAA
- Protein Sequence
- MVRKYIRKSQRKSWSADTMKLAIEAVIQKNYSIRRASMEHKVPQATLSRKVNQIRTEPEKDIDVLANPFGSNFQTVFNKEQEAELCQFIHTLEDQFISLNNLDIRQLAYQVAERFNIPHRFNKNSAVAGEDWYRGFLKRNPEVCIKKLDSYEKVTGMRKEKVYKFFDLLEGIASKHQLEASDIYNLDETVITCSLRTSNDTATVTENLENSNSSHSKLVTATVCFSASGTYLPLMLIFPCSNRNKNIINSAPFGAWAEFDQSGQMQLDIFINWLRKFIYFSKATKDSPVLLIVDGYRTYLKKLQVLELAKENGINILCLPPHCTEKLQPMRQDFMKTLSAAYTAEVAKWMLLNSESTVSIQEVYQLFGNAFMKVSTVASPIDGFHNTGIWPADRDRFENEFIQVTKEGLKTTTKPLKNTINETGSISIRNDIISKRPAAPTVISKNIVHEPIVVITQDCSQPYVVQSLETITEQNQNLIQQTIIQQSFNEPEAIEHYSIIDEQTTESARIDNQTSDIDTIHEHVEGKVCSAIIPPEAQLSEVQIEDIQNLIRSQRKLHFYVSPCKLNLLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -