Abak008743.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- lola
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000004.1:11475374-11482292[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-12 3.8e-09 35.9 0.3 3 38 247 283 247 287 0.87
Sequence Information
- Coding Sequence
- ATGTGGATGTCCACGCATCATCATCAAAAACAGTTGCAGAGTCCTCAACAATCTTCGGGATTCTCGTACCGTTGCGAAGTTTGTGGAAAGGGTTACCAACACAGAGCGACTTTGCTGAGACACACGCGACACGAATGTGGTAAAGAGCCAAAGTTCAAATGCCCCTATTGTCCGCACCGGACGAAACAGAGGGGAAATCTCTATCAGCACATCCGTACGAATCATCCAGGAAAAACTGTATTTTCGAATACAGTTGACGATGGCGCCGCTCTTCCCGATCGTCAGGCCACGGCTTCACATCTGTCCGCGCTGCGGTCAAATGTATTCCTGGGCTTCGAACCTTCGCAAGCATCTGAAGATGGGTTGTGGCATGGTCACCTGCGAGACTCACTTCTCCTGCCAGTACTGTCCGTATCGATCCCGCATCGAGGCCAGCTTCATCAAGCACCTGCTCTCCGTGCACAATATCAAGTAGGACAGGGTACCCCAGCACCGGGCTGCCGCCATAAGTGGCGGTACGTCCGGTACTGGGGTACAAGCTGTGGTCCCAGTACCACCACAGGTGCCGGTGGTACCGACGGTACCGGTCGTACCAGTCGTACCATCGGTACCTGCTTTGGCCTCGGCATTGTTGCCCAGTCTGCAAGAACTCAGCGGACTGATGATGCAGACTGGTTACCTATTGAAGATCCATTGCGTCTAAGTCGACGAGGTAGACGAGCAAAACCAGTGCCTATAGAGATCATGAGAGCAGCTCTCCAAGCTTTAAATGAGGGAATGTCGTTTAGAAAAGCAGCGGAAGTATACGGCATCACTAAGTCAACATTACAGAGGATCAGGGCGAAGCAACGGTCCAGTGCTGGTGGTGTCTTTCTAGCCACTGTCAAACTTAACATCAGTGGATCTACAGAGCAATCGTGA
- Protein Sequence
- MWMSTHHHQKQLQSPQQSSGFSYRCEVCGKGYQHRATLLRHTRHECGKEPKFKCPYCPHRTKQRGNLYQHIRTNHPGKTVFSNTVDDGAALPDRQATASHLSALRSNVFLGFEPSQASEDGLWHGHLRDSLLLPVLSVSIPHRGQLHQAPALRAQYQVGQGTPAPGCRHKWRYVRYWGTSCGPSTTTGAGGTDGTGRTSRTIGTCFGLGIVAQSARTQRTDDADWLPIEDPLRLSRRGRRAKPVPIEIMRAALQALNEGMSFRKAAEVYGITKSTLQRIRAKQRSSAGGVFLATVKLNISGSTEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00144200;
- 90% Identity
- iTF_00144200;
- 80% Identity
- iTF_00144200;