Ahis017611.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388144.1:5813646-5820431[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0028 0.18 12.6 3.8 1 23 92 114 92 114 0.98 2 12 0.031 1.9 9.3 0.5 2 23 121 143 120 143 0.94 3 12 0.2 12 6.8 7.0 2 23 158 179 157 179 0.98 4 12 0.21 13 6.7 7.9 1 23 184 206 184 206 0.97 5 12 0.013 0.82 10.5 0.9 1 23 214 237 214 237 0.96 6 12 1.6 98 3.9 1.4 2 21 246 265 245 266 0.93 7 12 0.37 23 5.9 2.7 2 23 274 295 273 295 0.96 8 12 0.26 17 6.4 0.9 1 20 401 420 401 422 0.91 9 12 0.25 16 6.4 2.5 2 23 430 451 429 451 0.96 10 12 0.0078 0.49 11.2 2.5 1 23 454 477 454 477 0.96 11 12 0.07 4.4 8.2 0.6 2 23 483 504 482 504 0.97 12 12 0.0019 0.12 13.1 3.7 1 23 509 532 509 532 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCAGAGCCGGCAGAAATGGACAGCGCCTCGCTGGAGGCTTTTTCCACAGTCTGGGTGAAGATGGAGGTGGAAGAAGACGGAACGGTGGAGGGAATAGACCAACAGGAAACCGAGGAAAGTAACCAGGGTACTGAGGACAATTATCAGGAAACTGACGGAAATGACCAGCAAACCGAGGATAGTAGCCAGGAAGTTCGGGTTCTGCCAAGACGTAGTAGGAGGAAACCAGCCGCACCGAGAAAAGCTAAAAACGTAGAACAACAAATATTTCAATGTGAATATTGTGACTATAAAGCTATGCACAAAAGCTCATTAAAATACCACTTATTGAAACACACTAACCCCGATCCGATACCTTGTAGCGCCTGTAGTTACACAACCAACCACGCAGCGTCCCTCAGACGGCATACACTCTCCGTACACACACCGGAAGATGACCCAGCCATTCAGGCGTTGCCCGATAAAAAATGCAAAGACTGCGACTTCACGTGCAAGTTCTCATGGAAACTCTTCATGCATAAAAAAAAACACGAGGAGAAGTCTTTCCACTGCCAGCAGTGCGATTTCTCAACAGCACGCAAAAGCAACTTCGATAAACATTGCCGGACGCACAGACACAAAGAGTCGATCACGTACGAATGCGACAAGTGTCCCTTCGTGACTAAACACGAAGGCCATATATCTAGACACTTAGCGGTGATTCACAAGGAAGTCTCTGAGAATGCCAGCAAATGCGATCACTGCGAATTCTCTACTAAAGTACGGTGGAGACTGAATATACACAAGAAGAACAGCCGACAAGAGAAACCCATCAAATGCGAATACTGTGATTTTGTAACGGATTATAACTGCGAATACAAACTGCACAAGCAGCAACACATCTCCGATATGGCGTTAGTCGCTTCCGGTTTAAAGCTTCCGATTGAGGACATGCAAAATTCCGTCATTATTCAAATTCAAAAACCCAAAGGGAGGGCAGCGATGACCGAATCTTCCACCGATGAAACCTACAATGAGAGAGAGTTCATAGTGGACACGGCGTGTGAAGAGATAGACTGGAGAAGCATTGAGGTTGGTGAAAAGCCCGGAGAAGAAAAGCCATTCCATTGCATCCTATGTCCATACCAGTCTAAATTCAAAGCGTCGGTGCAACGTCACTTCCAACGGAACCACACCAGCGCGAACAGCAAACCTTACAAATGCGTAAACTGTGACTTCTCCACCAAAACCAGAGATCAGATATCTTTGCACAACAAAAGATCCAAATCTATCTACCAAATAAGCTGCAAGGAGTGCGAATTCACAACATTCTACAAATGCCAAATGGCCGAGCACCAGCGAGTGCATTGGCAGTTCAAATGTAAACTCTGTGAGTTCGTATGCAGAGTTAGTTATGATTTGAACACACATTACACCGTCGTGCACTTGGGGCAGGGTTTGAAATGTCGGTTTTGTGATTTTCAAGCAGCAAGAAAGGGCAGTCTTCTGAACCACGAGAATACGCACACTAGTAAGCGCTTCCGGTGCGGTCTGTGCGATTATTCGGCTACGAGACGTAATTTGCTGTTTAATCATATGAAGAAGTGTCACGCGGGTGAAAAACCGAAGATCATCATAAGCGACCGGAAATTTGAATTGTTGAAGAAAGTCGGTGAGGTTCGTAGCGGGGAGAGTGATTTGAAGAATGTCGATGATATGAAGAATCTTGATCTTTTGAAACATGTTCAATGTAGTTTGCAGAAAATTGAAAGGGATTTGAATCATGCTGAAAGTGATTTTTTGAAATGTGGTGAAAGTGATTTGAAGAACACTGAAAGTGATTTTGGGAATCACGGTGAAAGTGATTTGAAGAAAGATGAAAGTGATTTTTTGAATCGCGGTGAAAGTGATTTGAAGAATGTTGAAAGTGATTTTGGGAATCACGGTGAAAGTGATTCGAAGGAAGTTGAAAGTCAGAATGAGTTTGAAAGAGGGGATAATAATGAAAGTGCAGAGGGAAATGTTGAAAGTGGCAGTCAACTGAGGCATGTTGAGACTCAAGTGTATATTGAAAGACAGACGGACTACGAGAGAAAACATCACGAATTTCAAAGCAACACCATGTATGGAGAAGGATGGGTGTCTCCGCCGAAGCTGTGCGGAGATGCGTACCGGCTACACAGGAGCGGAGATGCGTACCGGCTAGACCTGGGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGACCGGATCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGATCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGATCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGCGTACCGGCTAGACCGGAGCGGAGATGAGTGCGGCGCTGTACTAGCGTGA
- Protein Sequence
- MASEPAEMDSASLEAFSTVWVKMEVEEDGTVEGIDQQETEESNQGTEDNYQETDGNDQQTEDSSQEVRVLPRRSRRKPAAPRKAKNVEQQIFQCEYCDYKAMHKSSLKYHLLKHTNPDPIPCSACSYTTNHAASLRRHTLSVHTPEDDPAIQALPDKKCKDCDFTCKFSWKLFMHKKKHEEKSFHCQQCDFSTARKSNFDKHCRTHRHKESITYECDKCPFVTKHEGHISRHLAVIHKEVSENASKCDHCEFSTKVRWRLNIHKKNSRQEKPIKCEYCDFVTDYNCEYKLHKQQHISDMALVASGLKLPIEDMQNSVIIQIQKPKGRAAMTESSTDETYNEREFIVDTACEEIDWRSIEVGEKPGEEKPFHCILCPYQSKFKASVQRHFQRNHTSANSKPYKCVNCDFSTKTRDQISLHNKRSKSIYQISCKECEFTTFYKCQMAEHQRVHWQFKCKLCEFVCRVSYDLNTHYTVVHLGQGLKCRFCDFQAARKGSLLNHENTHTSKRFRCGLCDYSATRRNLLFNHMKKCHAGEKPKIIISDRKFELLKKVGEVRSGESDLKNVDDMKNLDLLKHVQCSLQKIERDLNHAESDFLKCGESDLKNTESDFGNHGESDLKKDESDFLNRGESDLKNVESDFGNHGESDSKEVESQNEFERGDNNESAEGNVESGSQLRHVETQVYIERQTDYERKHHEFQSNTMYGEGWVSPPKLCGDAYRLHRSGDAYRLDLGGDAYRLDRSGDAYRLDRSGDAYRLDRIGDAYRLDRSGDAYRLDRSGDAYRLDRSGDAYRLDRSGDAYRLDRSGDAYRLDRSGDAYRLDRSGDAYRLDRSGDAYRLDRSGDAYRLDRSGDAYRLDRSGDAYRLDRSGDECGAVLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -