Ahis018349.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388159.1:2927898-2934488[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.4 2.2e+02 2.9 0.1 2 23 106 127 105 127 0.94 2 14 7.9e-05 0.0049 17.5 1.0 2 22 131 151 130 153 0.89 3 14 0.0044 0.28 12.0 1.6 3 23 376 397 374 397 0.95 4 14 0.59 37 5.3 0.0 3 19 407 423 405 425 0.95 5 14 0.034 2.1 9.2 0.4 2 23 436 457 435 457 0.94 6 14 0.0048 0.3 11.8 0.9 1 23 505 528 505 528 0.93 7 14 1.4 89 4.1 0.8 2 23 537 559 536 559 0.93 8 14 1.3 82 4.2 3.6 1 23 566 591 566 591 0.90 9 14 1.2 77 4.3 0.5 3 22 603 622 601 624 0.78 10 14 3.9 2.4e+02 2.7 1.0 1 23 629 652 629 652 0.91 11 14 0.00034 0.022 15.4 2.2 1 23 658 680 658 680 0.97 12 14 0.00011 0.0069 17.0 1.1 1 23 687 709 687 709 0.98 13 14 6.2e-05 0.0039 17.8 2.3 1 23 714 736 714 736 0.96 14 14 0.0093 0.58 10.9 1.4 1 21 742 762 742 763 0.88
Sequence Information
- Coding Sequence
- ATGTCTTCTGACGATTCCGAGGACGAGCCCTTGTCCGTCTTGGCTGCGTTAAAAAAACGAAACAAATCAGGACTTGAAATATTTCCAGTATCACACACTTCAGCGAAGCTCAATCTCAAAAAGGAATGCGACGTGTCGCTATCATTTCAGCAGTTTCAAAATGAACAGATGCCGGTTGTCGAAAGACCGAAAGATGTGTGGTTATGTTTAACAGATTTCAATGTGACAGGACCATATACCTGCCTTTTGTGTTCAGAGTGGTTCATAAACAGGAATAGAGTTATAATTCACTATGTGATCAACCATAAGAAAGATTATTGTGGAATCTGCAGATACTTAGTTCCGAACAGAGAAGCTTGGTGGGAGCATCAAAAATTCCACACACCATGGAAATGCTCACAATGCGATGAAAAGTTTGCATCTCAGTCAGAGCTTCGTAAACATTTCAGCGACTCTCACAATCTTGTCCACTGTCGTTTTTGCTACCTGCGCCTGCCCAATGATGATCAGTATCACAGACATTTGTTTCAAAAACATTGTGTCACAAAAGTATCAAGTATACATGGAGATTGTTTGTGGAATTTTGAATGTAAAGGTGACCAGAAATTCTTATGCTTACTCTGCTCAAAGACTATCGATGTGGGTAGACAATTTTCCGATCACTTCATGTCATACCATCACTTCACCCTTAAATGCTTCATGTTTTTTGTTGCTGGTATCAATCTACCGTTCAAGGTCAAAGGTGTGGAACTGACTCCAGAATTTGTTGATACGCAGCTGAAAGCATACAGTACTTTTGGTTATGTTGATTTTATAAAGAGTCTTAAATTCAAGGAAGAATCGGTGACTGTTACTGAAGAAACTCCAATTACTGTTGATTGTGAACCGGAGTTGAAAGAGTTCAGTGAAAATTATGATGAGAGCGAAGATGTGAAGCTTAGTGAAGAAATAAGAGGTTACAGAGGAGTTCAAGACTTTGACGTCACTCTTTTGGAAATTATTACAACACAAAAATGCTATTTTGACTATGTAGAAGAAACACTCAATAAAATAAACTCTAATGAGATGCCATTGTCATCGGACATTACCTACACAAACGGTGCAGTCGAATCAAAACCTATTAACTGTTGCCTCTGTACTGAAGTTTTTATGAAAAAGAGTGCTTTTGAGAGCCACATGAACAAAGCGCACAGTATAAAGGCGCTACCGATTTACTGGTGCCGAATATGTGCCGCAGTTTTTGACAGTTACTCTGAATTAGAGACACACTCCACGCAAGAGTTAGGAGAATTCGATGATTTTTGGATCTGTCAGTTCTGTGATAAAGAGTTTGATGGTCGAGAGGAGACAAGGAAACATTTGACAGAGCACTGGGACGAGATAGAATATGATAACTGCTTCAGTCCACATTTAGGGTACAAATGCAAATTCTGTTCGACTCTGTTTTGGAATGAGACTGACCGAGAGTCTCACCATGTTAGAGTGCACTCCCAAACAAATAAAAGTGATTTCTATAACTGTACACTCTGTGGTGAAGTTTTTGGAGACAAGGTGTTTTTTATTCATCACTATATTGAGAAACACGACAGTGACACTCCATATCTACTGAAATGCTGTATATGCTCCAATGTACTCGAAGATGTAGAAGATCTGAGAAGCCACTTTAGAGATTATCACCCAGAAGCAAAAAGAATATTCTGTTGCTTGGATGACTGCAAATACAGGCCGTTCAGTCAGAGGAAATCTTTCATGATTCATTTAAAGTCATTCCATGACCCGATATTCCGCAACCCTCGCTCAGTAATCTGCCAGACATGCGGTTTGGAGTTCAGCAGCGCCAAAGCCTGTTCCTTACATGCTTCAAGAGTTCATGGGCCGGGTAGATTCCGCTGCACTCTGTGTACAGAAGTGCTTCATACTGGAGACGAAAGAAAGATTCACTACCTCATTCGTCACCCGGGCCGTGCTCAGTACCAATGCAACGCATGCGATAAGTCCTTCCAATACAAATCCTCGCTGTACATGCATAAACAAGAGCATACACCGAACAAGAAGGACTATACTTGCGACTACTGCGGGAAAAACTTTTTGAAAAAAGATTCGTACCGCGAACACATAATGATTCACGAGGCGCCGCGGCACGCCTGCTCGTACTGCCCGATGCGTTTCGTCCAGCGCTCCAACATGCTCCGCCACGAACGGAGGCACACCGGGGAAAGGCCCTACGCCTGCGAATACTGCCCTAGAACGTTTTCCGACAAAGGCGCTTGTACTTCACATTCCAGGAAAGTTTTTTTTTTTATGTTTTTCGGTGACGAGACGAGGAAGTGGCTCACCTGA
- Protein Sequence
- MSSDDSEDEPLSVLAALKKRNKSGLEIFPVSHTSAKLNLKKECDVSLSFQQFQNEQMPVVERPKDVWLCLTDFNVTGPYTCLLCSEWFINRNRVIIHYVINHKKDYCGICRYLVPNREAWWEHQKFHTPWKCSQCDEKFASQSELRKHFSDSHNLVHCRFCYLRLPNDDQYHRHLFQKHCVTKVSSIHGDCLWNFECKGDQKFLCLLCSKTIDVGRQFSDHFMSYHHFTLKCFMFFVAGINLPFKVKGVELTPEFVDTQLKAYSTFGYVDFIKSLKFKEESVTVTEETPITVDCEPELKEFSENYDESEDVKLSEEIRGYRGVQDFDVTLLEIITTQKCYFDYVEETLNKINSNEMPLSSDITYTNGAVESKPINCCLCTEVFMKKSAFESHMNKAHSIKALPIYWCRICAAVFDSYSELETHSTQELGEFDDFWICQFCDKEFDGREETRKHLTEHWDEIEYDNCFSPHLGYKCKFCSTLFWNETDRESHHVRVHSQTNKSDFYNCTLCGEVFGDKVFFIHHYIEKHDSDTPYLLKCCICSNVLEDVEDLRSHFRDYHPEAKRIFCCLDDCKYRPFSQRKSFMIHLKSFHDPIFRNPRSVICQTCGLEFSSAKACSLHASRVHGPGRFRCTLCTEVLHTGDERKIHYLIRHPGRAQYQCNACDKSFQYKSSLYMHKQEHTPNKKDYTCDYCGKNFLKKDSYREHIMIHEAPRHACSYCPMRFVQRSNMLRHERRHTGERPYACEYCPRTFSDKGACTSHSRKVFFFMFFGDETRKWLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -