Basic Information

Insect: Apocheima hispidaria
Gene Symbol: -
Assembly: GCA_947579745.1
Location: OX388155.1:14225461-14236562[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0033 0.21 12.4 3.3 1 23 344 367 344 367 0.95

2 11 0.028 1.7 9.4 8.2 2 23 375 396 374 396 0.96

3 11 1.9 1.2e+02 3.7 0.1 1 12 400 411 400 418 0.88

4 11 8.3e-05 0.0052 17.4 3.1 2 23 428 450 428 450 0.97

5 11 0.0011 0.071 13.8 0.1 1 23 454 477 454 477 0.95

6 11 0.096 6 7.7 0.3 2 20 495 513 494 515 0.91

7 11 0.096 6 7.7 0.3 2 20 549 567 548 569 0.91

8 11 0.035 2.2 9.1 5.3 2 23 608 630 607 630 0.91

9 11 3.9 2.5e+02 2.7 2.1 1 21 642 665 642 667 0.56

10 11 0.038 2.4 9.0 3.2 1 23 669 691 669 691 0.97

11 11 8.9e-06 0.00056 20.4 1.7 1 23 697 720 697 720 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0033	0.21	12.4	3.3	1	23	344	367	344	367	0.95
2	11	0.028	1.7	9.4	8.2	2	23	375	396	374	396	0.96
3	11	1.9	1.2e+02	3.7	0.1	1	12	400	411	400	418	0.88
4	11	8.3e-05	0.0052	17.4	3.1	2	23	428	450	428	450	0.97
5	11	0.0011	0.071	13.8	0.1	1	23	454	477	454	477	0.95
6	11	0.096	6	7.7	0.3	2	20	495	513	494	515	0.91
7	11	0.096	6	7.7	0.3	2	20	549	567	548	569	0.91
8	11	0.035	2.2	9.1	5.3	2	23	608	630	607	630	0.91
9	11	3.9	2.5e+02	2.7	2.1	1	21	642	665	642	667	0.56
10	11	0.038	2.4	9.0	3.2	1	23	669	691	669	691	0.97
11	11	8.9e-06	0.00056	20.4	1.7	1	23	697	720	697	720	0.98

Sequence Information

Coding Sequence: ATGTGCGATTTATACATTTGTCGAATATGTCTCAATACTGCTGTGAGAGGGTACAAACTAGAGAAGCACTGCCTTCGTAATTACTACGAATATGTAATGCGACAAAAACTAAACAGCAAAGATGGGCTGCCACAGTGGGTGTGCTATGAATGTGCGATGATGCTACACAAGTTTCACAAGTTCAAGGAGAAGTGCTTGCAAGGACAGCAGGTACTGAAACAGATCTCAAGAAAGGGAAATATTAGTTACGAATCAGTTGAAGTGATGAACAGATACAGCGAGAACCTAGTATCCCCTGTAAGTATTGCCGTAGCAAGCAAGCGTGTTAAAACAACAACGGTCAAACACAAACACAAAATTAAACACAAACCCATTGAACTCGAAAAGGTCATGTTGAACTATGACAGTGCAGACTCGATGAAACACGAAGATCTTGAAGTGAAAGAAGTGAAAAACATGTTCGAAAACACCATAATTATTAACGATGACGATGCTGAAAAAAAAACGCCCATAGAACAAATAGAAATAAAAACTGAAACAAACACTGTAACAGAAGAACAATTTAAATCTGAAGCAACAAAACAAGACAAAATAATAACCGATCCTTCAAGCAATACGTTTGATAGCATACAGAACAGTAACAACACGAGCGACACAAAGATTGACATTAGTAACACAAACACTAACATAGGACATGACATAGATGTTAATGATGACATGAGCAACACAGATCATATAGACCAAGCGATGTCAAGCGAAGACGAAAACATATTCCTTGATATAGTAAAAAAAGCTGTCAAAGGCGAGAGCAAATTGGTATTTCTAGATAATATTGAAATGGAGCCAGTTAAAAAGAAGAAAAAGTACACAAAAAAGACGGAAAATTCTAAAAGTAAAGTGCTAAAGTTTGAGAAACCTAAGAAAGAATACTTGACATCGGAGCATTGGAGGAAGTTTAACCTGAGCGAAGAGGAAGCGATGCATGAGTTTAAGCAAAGAGAAAATAGTGATCAATACGTCAACGCTAATTACAAGTGTCATAATTGCTTGAAAGGGTTCTCTAAAGTTGAAATGTTGATGCGGCATGTAAAATTTAGGCATGAAGAGTCTTGTGGTCCAATCGAGTGCCGTTTCTGTCATATGCGTTTTAAACAGAAGAACAAGTTGTGTAAACATCTGAAGCAGCACTACGCGGTGTATCAGTGCTTACGATGTGATATGCGGTTTCGACTTGAGAGTTCTGCAATTTTCCACGAGGACTATCACAACGGTGTGACGAGAAAATGCAAATATTGCGGCGAGGAGTTCAAACACTCGTCGACGTACTACACGCACGTGCGCATGTCGCACCGCAGCGCGCACGTGTGCGTGGCGTGCGGCGCCTCCTTCGTGTCGGCCGCGGGGCTCCAGCAGCACCGCAGGATCAAGCACTACGACAACACCGACGAAGCGTCAAACGATCCAGAGCCAGCGGAAAACACGTACTGCTCCAAGTGCGACATTCGTTTCGAGACGCAAGCCGCGTACGACGAGCATCTCACTCACTCCAACATGCACGGAGATCTCAACACACGCAAGCCGCGTACGACGAGCATCTCACTCACTCCAACATGCACGGAGATCTCAACACGTGAGTATAACACGTACTGCTCCAAGTGCGACATTCGTTTCGAGACGCAAGCCGCGTACGACGAGCATCTCACTCACTCCAACATGCACGGAGATCTCAACACGGACTCTGAAATCGCGCGCAGTAATCTGAAAGGCAACAAGAAAATAGCGCCGCAAAGTTTTAAGGGGCTTCGTAAGAAGAAACCTACCACGTGCCAGTATTGCGGGAAACATTTCGCGACGCAAGGGCAGTGCATGAAGCACCACCTGGCGGAGCACCCGCGCCGCTCCTTCTACCCGCCCGACAAGAGGCACATCTGCGAAGTGTGCGGACAGTCGCTGGCCGCGGTGAGCATCGCGTCCCACATGAACCGGCACACGCGCGAGCACGTGTACCCGTGCGCCACCTGCGGCATGCAGTTCATATCCAAGAGCAGCCACCATCGGCACCAAGTCACGCACACCGGCGAAAGGCCGTACCCGTGTCCGCTGTGCGAGAAGCGGTTCACGCAGAAGAACAGCATGCAGCTCCACTACCGGACCTTCCATCTCAAACAACCATATCCAAAACGGAATAGAAGAAAGAAGACAGACGTCGAGATGCCTATAATGGAATGTGCCATAAACAGAGAGCGGATGCAAATAATGGAGTGTAACCGCGACCGCAGCGACATAGACAGCAACGACACGCCGCCGGTCACCAGGTGGCGCGCCACGTTCTAA
Protein Sequence: MCDLYICRICLNTAVRGYKLEKHCLRNYYEYVMRQKLNSKDGLPQWVCYECAMMLHKFHKFKEKCLQGQQVLKQISRKGNISYESVEVMNRYSENLVSPVSIAVASKRVKTTTVKHKHKIKHKPIELEKVMLNYDSADSMKHEDLEVKEVKNMFENTIIINDDDAEKKTPIEQIEIKTETNTVTEEQFKSEATKQDKIITDPSSNTFDSIQNSNNTSDTKIDISNTNTNIGHDIDVNDDMSNTDHIDQAMSSEDENIFLDIVKKAVKGESKLVFLDNIEMEPVKKKKKYTKKTENSKSKVLKFEKPKKEYLTSEHWRKFNLSEEEAMHEFKQRENSDQYVNANYKCHNCLKGFSKVEMLMRHVKFRHEESCGPIECRFCHMRFKQKNKLCKHLKQHYAVYQCLRCDMRFRLESSAIFHEDYHNGVTRKCKYCGEEFKHSSTYYTHVRMSHRSAHVCVACGASFVSAAGLQQHRRIKHYDNTDEASNDPEPAENTYCSKCDIRFETQAAYDEHLTHSNMHGDLNTRKPRTTSISLTPTCTEISTREYNTYCSKCDIRFETQAAYDEHLTHSNMHGDLNTDSEIARSNLKGNKKIAPQSFKGLRKKKPTTCQYCGKHFATQGQCMKHHLAEHPRRSFYPPDKRHICEVCGQSLAAVSIASHMNRHTREHVYPCATCGMQFISKSSHHRHQVTHTGERPYPCPLCEKRFTQKNSMQLHYRTFHLKQPYPKRNRRKKTDVEMPIMECAINRERMQIMECNRDRSDIDSNDTPPVTRWRATF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -