Ahis010124.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- su(Hw)
- Assembly
- GCA_947579745.1
- Location
- OX388164.1:5268881-5280905[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.24 15 6.5 3.6 1 23 92 116 92 116 0.94 2 12 0.028 1.8 9.4 0.1 2 23 124 146 123 146 0.94 3 12 2.2e-05 0.0014 19.2 0.8 1 20 151 170 151 172 0.95 4 12 9.2e-07 5.8e-05 23.5 0.8 1 23 183 206 183 206 0.96 5 12 0.64 40 5.1 2.9 1 23 212 237 212 237 0.92 6 12 0.00031 0.02 15.6 0.6 1 23 244 266 244 266 0.96 7 12 0.0032 0.2 12.4 0.1 1 23 271 293 271 293 0.98 8 12 3.2e-05 0.002 18.7 0.5 1 23 299 321 299 321 0.99 9 12 0.0098 0.62 10.9 0.5 2 23 327 349 327 349 0.97 10 12 0.26 17 6.4 1.2 7 23 363 382 356 382 0.80 11 12 9.1e-05 0.0057 17.3 1.0 2 23 391 412 390 412 0.96 12 12 3.5 2.2e+02 2.8 0.3 3 23 420 443 419 443 0.81
Sequence Information
- Coding Sequence
- ATGCCACCCAAACTTAAAAAGATTGGGCGTCCAATGGGATCAAAGAACAAGAGTTCCATATCGCTACGGAACCATACAAAAGCAAAGAAATCTTCTATAGTTTCCTCGGCGCTGAAAGCGATAAGAAATAACATGAAGAAGAAGATCAAAGTGAAGACAATCAAAGTTGAGTATGTTGCCGAGGATAACAGTGATTACAGCTTTAAGAATGAATACAGCGACCCGGACGATCCTAACCTTTCTATTCGAAGTATAGAGAAAAACAAGATTATATACAACTGCAAAAAGTGTACTAATAAGAACTTCAAGTTTGAGAAAAATTATAAACAACACCTCTTACTGGAGCATTCAACATTGCCAGGCAGTATAAGTTGTAACCAGTGTCCAGTGGTCTGCCCTGACCAAGAAACATTGGATGCGCATGTTAGCAAAGTCCATGACCGGAGCGTGTTCAACTGCCAGCACTGCGGCAAGGAGTTTGTTAGACAGGCTCATGTGCTACGACACATGGCACAAAAGGGATGCGATGGCAGCATGGTTGCATCATTCCCCTGTGAAATATGTAATGCAACATTCACAAGAAAAGACAATTTGATTGTTCATCTCCGCCATATGCACATACGAAAACAGTTTTACCGCTGCAAGCAACCAAAGTGTGAATTTACGAGCAAGAATTTTACAAAGCTGATCAGGCATTGGCATGCAAGCCATGCAGAAGTACCTAATCGGTTTGATTGCCATTATTGTGGTAAGTCAACCATGTCCAGAGCGGCCATGGCCAAGCATCTAGAAATACACGGAGAGAAAAAATATGCTTGTGATGTGTGTGGGTACAGCACGTACACGATCGAGGTGATGCGGCGTCACATCCTGACGCACGTGGACGAGAAGCCGTACAAGTGCTCATTGTGCGGCTCCTCGTACATCCAGCGCGCGCAGCTCGACCGCCACATGGAGAGGCACGACGGCGCCGCCGCGCGGTGTGAAGTCTGCGGCGACAGCTTCGACGGCAAGGCCAAATTGATGATCCATAAGAGGAAAAAGCACGAAGGAAAAAATGAACAACATTGTCCGTTCAAGGATTGCTTTTACTCGAAAAAGGAGTTTAACAGCGAAGACTCGCTGGTGAATCATATAAACAAGCATATACAACAGAAGAGCAAACTGTGGAGGTGCGAGGTGTGCAAGAAGCAGTTCACGTCCGAGATGAACATGCGCCGGCACCTCGGCACGCACACGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCGTACGTGCGCGGCCAGCAGCTCGTGCGCCACGTGCGCAAGTTCCACCCCGACGTGTTCCGCACGCACCTGGCGCACGTCCGCAACGTGCTGTCGACGAACCCGAAGAGCGACCGCGTGAGCAAATCCGAGCTGGAGTCGATCCTGAACCTGCTGGACGCGGAGGCGGAGCGCATCCTGGAGGGGTACAGCGGCGCCGACGTGCTCTACGGGGGCATGCAGGCCGCGCCCGAGCCCGAGGAGGAAGATTCGCCCCTGATGTCCGAAGAAATGCTGGCTGAGAACTTGGGGAACCTTCTGGAGCATTTAATCGATGACGACACCCTGCAGTGCCTCGGTTGGCCCGACGAACCTGTTGACAATATCCTGGAGCGCGTGATCGAGCAGTGCGGCGCGAAGCCCGCCGACCGCGACATGTGGTCGCGCGTGCAGCGCCTCAGGGAAAACGCGAAGCACCTCTTCCTATACGTGGTGGACGATAAGAACGTGGCGATGATGCTCGGCACACACACCATCGACCAGATCGTGAAGCACATCCTGCACCAGGTGGACACGGAGGGCGCGGCCGCGGCCGGGGGCGGGGGCTCCGCCACCGAACCCGGCAAACCCACTGAGATTGAAATCGAACTCGCCGTCACATAG
- Protein Sequence
- MPPKLKKIGRPMGSKNKSSISLRNHTKAKKSSIVSSALKAIRNNMKKKIKVKTIKVEYVAEDNSDYSFKNEYSDPDDPNLSIRSIEKNKIIYNCKKCTNKNFKFEKNYKQHLLLEHSTLPGSISCNQCPVVCPDQETLDAHVSKVHDRSVFNCQHCGKEFVRQAHVLRHMAQKGCDGSMVASFPCEICNATFTRKDNLIVHLRHMHIRKQFYRCKQPKCEFTSKNFTKLIRHWHASHAEVPNRFDCHYCGKSTMSRAAMAKHLEIHGEKKYACDVCGYSTYTIEVMRRHILTHVDEKPYKCSLCGSSYIQRAQLDRHMERHDGAAARCEVCGDSFDGKAKLMIHKRKKHEGKNEQHCPFKDCFYSKKEFNSEDSLVNHINKHIQQKSKLWRCEVCKKQFTSEMNMRRHLGTHTLDRPRRCMYCVSARAYVRGQQLVRHVRKFHPDVFRTHLAHVRNVLSTNPKSDRVSKSELESILNLLDAEAERILEGYSGADVLYGGMQAAPEPEEEDSPLMSEEMLAENLGNLLEHLIDDDTLQCLGWPDEPVDNILERVIEQCGAKPADRDMWSRVQRLRENAKHLFLYVVDDKNVAMMLGTHTIDQIVKHILHQVDTEGAAAAGGGGSATEPGKPTEIEIELAVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00206392;
- 90% Identity
- -
- 80% Identity
- -