Ahis004399.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388155.1:1038711-1051041[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.36 23 5.9 7.0 1 21 418 438 418 440 0.94 2 11 3.1e-05 0.002 18.7 3.0 3 23 449 469 447 469 0.96 3 11 0.023 1.5 9.7 1.7 1 23 473 495 473 495 0.98 4 11 0.28 18 6.3 1.2 1 23 500 523 500 523 0.95 5 11 6.8e-05 0.0043 17.6 0.8 1 23 527 550 527 550 0.95 6 11 0.0018 0.11 13.2 0.1 2 23 564 586 563 586 0.96 7 11 0.1 6.4 7.7 0.4 2 23 611 633 610 633 0.95 8 11 0.00027 0.017 15.7 0.5 3 23 650 670 648 670 0.96 9 11 0.0052 0.33 11.7 1.1 1 23 676 698 676 698 0.95 10 11 1.8e-06 0.00011 22.6 0.7 2 23 704 725 703 725 0.97 11 11 1.3e-05 0.00084 19.9 0.1 1 23 731 754 731 754 0.96
Sequence Information
- Coding Sequence
- ATGACTAATAAAACGGATATTTGTCTAATCTGCTTGCGCACAGATAAAGTGCTGAAAAATATTGATATTATACTGACAGATTTTCACGACGAACTATGCAGAAATTCTGATAAAGAGCCAATCAGTCATCTCTGCACGTTACTGCCGGAGTCCTCCCTCGATACATGGACGTCAGACAATGCACAGAATGTATACACATTTGTACACGAGAATGTAACATCCATACAACTTGAACCCAATGCAGTGGAGCCATCGAGAATCGAAACTGGAAAGAGTTCTGGAAATAATAATGCAGAGGATGTAGTGGAATCTCGGGATTTTCTCGAAAAGTCGCATCTAAAATTCGAAATTAAACTAGAAACGGACGACACTCATGACCGCCTGACTGAAGACGATTCAATTAAAGATATAAAAGATTTTCTCGTTTTTGAAAACGAAGATACAGCAAATTCCTTTGAAGAAATTTTGTTTGAAAGCAACAGTAAATTAGAAATTAACGAAAAACTAAACAATGATGAAGTGAACGATGTATTAAATGATCTCAGTTTTAGTGATGGTGATGACGACAAACTAATATATTTAAAGAACGAAGATGCAAAGAAGAATAAAATAAAACAAAAGAAGTCTACGAGAAAAAGATCTTTTGATAAAGACTGTCATTCTGAAAACGAAGCTATTAGCACAGATAGTAAAGAAAAAGGTGCAAAGAAAGAAAAAGTTTGCAATAAAAGAAATGTTGCAAAGAGGAATAAAGATAGCAAACAAAAAGTTGCAAAGAATAATGTTGTTGACAAAGATGCTAAAAGAAAAGTCCATACTCATAAAGCTATTATAGCTGAGCTGACGAATATGTTAGATTCTAAACTAAAGGATGAAAATGGCGAACGGGACTTAAAGCTTTGTAGTAAAAGTAAAAGTACATTTAGTAAAGAAAGATTAAAAGAAGAAGTCAGAAGTAAATTTGCTTCGTGCGGTGAACTGAGAACCACAGACGGCACCATCATAGACAAGGAGTTTATATTGCACTGCCTCGAAGATAAAGTGACAGAATTTATCATGAGACCACTATATCATGCTATATATCGTAAGCATGACTTCAAACCCAGGGCATTGAAATTATTCAAATGCATCCAGAATAAATACAAGAACGAATATGATTCTGTTTTTGACATAGAGTACCTAAATACGAAAGAAAAAATGATTGAAGAATTTGAAAAGAGGAAAACTTACGCGAGTTACATCTCTACGGAGTTCAAATGTGAAATATGCTATCAGGGGTTTACACATGAGAAGAAATTGCAATATCACAAAAAATGCCACGATGAAAGCGCTGGAGAGATGATCTGTTCAATCTGCAAAATCCGCTTTCGAAATGCGAGTAGCTTATGCAAGCATATGACCAGACACGAAGCCATCTACAAGTGCAAGCTGTGCCCGCTCGTCACTTACTACAAACAATCAATGGAGAACCATTATCAGCAGCACCAGGGCGTGAAATATACGTGCAAACAGTGCAATGCTGTTCTTGGGAGTATGTCGGCTTACCATACGCATATTTCGTATCGCCACGCGCGTGATCACGTCTGCACAGTTTGCGGGCGAGCGTTCTACTCGCGCGTGGGGCTGCGCGCGCATCTCACCAGGTTCCATCAGAACGAGGTGCCCGCGTCAGATGCCGCCACGAGCGTAGAGTGCGAGATGTGCGCGCTGACGTTCGCATCTAGTGAAGCTTATGACAAGCACATGCGAGTCACGCACAAGCAACCGATCTCACCCGGGACCATCGTCAGGAAACGAAACATATCTCGACCAAAGCCTGGACCTGTCTTGACGTGTCGAGTGTGCAGCAAAGTCGGATCGAGTTTCGCCTGGCTTCAACTACACTTCAAGAGAGAACATCCCGATGAAGACTTGGACGCATTATACGCGGACAAGAGAAAGCATCTGTGTGACATCTGCGGAAGTGGATTTACTAGCGTGTACACGCTCCGCGACCACATGAACGTGCACACGGGCGCTCGGCCCCACGCGTGTGACCTGTGCCCGAAGCGGTTCTACAGCGCCGCCAAGATGCGGGAGCACCGCGTGCGGCACCTTCCGGCCTCCATACCCTGCACAGAATGCGGGAAGCAGTTCAAGTCGAAGGCCAATCTCTACAATCATAAGATGACTCACACCGGCGAAAAAAATCACAAGTGTGACATCTGTGGAAAAGAATTCGCCCTGGCCGGCAACCTGAGGGAACACGTGCGGGGGGTGCATTACAATATACGTCGCGGCAAGAGGGGGGGCGCTCGGGAGGGGGCCGCCGACACGGGGGCGAAACGAACCAAGAGAAGAAAAACAGTGCCCGATGATACAGAAACAGACTCTGATTCTAGTGATTGA
- Protein Sequence
- MTNKTDICLICLRTDKVLKNIDIILTDFHDELCRNSDKEPISHLCTLLPESSLDTWTSDNAQNVYTFVHENVTSIQLEPNAVEPSRIETGKSSGNNNAEDVVESRDFLEKSHLKFEIKLETDDTHDRLTEDDSIKDIKDFLVFENEDTANSFEEILFESNSKLEINEKLNNDEVNDVLNDLSFSDGDDDKLIYLKNEDAKKNKIKQKKSTRKRSFDKDCHSENEAISTDSKEKGAKKEKVCNKRNVAKRNKDSKQKVAKNNVVDKDAKRKVHTHKAIIAELTNMLDSKLKDENGERDLKLCSKSKSTFSKERLKEEVRSKFASCGELRTTDGTIIDKEFILHCLEDKVTEFIMRPLYHAIYRKHDFKPRALKLFKCIQNKYKNEYDSVFDIEYLNTKEKMIEEFEKRKTYASYISTEFKCEICYQGFTHEKKLQYHKKCHDESAGEMICSICKIRFRNASSLCKHMTRHEAIYKCKLCPLVTYYKQSMENHYQQHQGVKYTCKQCNAVLGSMSAYHTHISYRHARDHVCTVCGRAFYSRVGLRAHLTRFHQNEVPASDAATSVECEMCALTFASSEAYDKHMRVTHKQPISPGTIVRKRNISRPKPGPVLTCRVCSKVGSSFAWLQLHFKREHPDEDLDALYADKRKHLCDICGSGFTSVYTLRDHMNVHTGARPHACDLCPKRFYSAAKMREHRVRHLPASIPCTECGKQFKSKANLYNHKMTHTGEKNHKCDICGKEFALAGNLREHVRGVHYNIRRGKRGGAREGAADTGAKRTKRRKTVPDDTETDSDSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -