Ahis009866.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- ken
- Assembly
- GCA_947579745.1
- Location
- OX388164.1:511306-516131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.015 0.92 10.3 0.2 3 23 271 291 270 291 0.97 2 14 2 1.2e+02 3.6 0.1 6 23 303 321 303 321 0.94 3 14 1 65 4.5 1.7 2 23 332 354 331 354 0.94 4 14 3.5e-07 2.2e-05 24.9 1.7 2 23 376 397 376 397 0.97 5 14 4.3e-05 0.0027 18.3 4.0 1 23 403 426 403 426 0.94 6 14 1.1 67 4.4 0.1 1 23 432 454 432 454 0.89 7 14 0.0058 0.36 11.6 0.0 1 23 460 482 460 482 0.95 8 14 0.035 2.2 9.1 1.5 1 23 622 644 622 644 0.98 9 14 0.0037 0.23 12.2 0.8 2 23 651 673 650 673 0.94 10 14 3.7e-05 0.0023 18.5 0.5 3 23 681 701 680 701 0.97 11 14 4.3e-06 0.00027 21.4 0.1 1 23 707 729 707 729 0.97 12 14 0.0017 0.11 13.2 0.1 1 23 735 757 735 757 0.96 13 14 0.11 7.1 7.5 0.4 1 23 763 785 763 785 0.92 14 14 0.012 0.77 10.5 3.4 1 23 791 814 791 815 0.95
Sequence Information
- Coding Sequence
- ATGAATATCGGTACAGAACAAGTCTTTATAGTGAACGCTACTGAACTAGATCAACAGAATCAACATGCACCGACACCTCTGCAGCTGCAGCAGGCTTTTGCAATGCCTCTGGTGGTGCCCATGCAGCCTGAAGAGGTACAGACAAGCATGTGTCTGGCGCAGTCCATGGGTCCTCTGTCTCGCATGCAAACGTGCCGACTGTGTGCCACCGTCACAGAGCTGGTGGTGCCCATCTTCCAAGGCGAGGGGCTGCAGAACAGCCTGGCCGATAAGATCCACCAGCATCTGCCGATACAGGTGTCAGAAAACGACCTGCTGCCAGTAGTGATGTGCTTCCAGTGCACCAGCACTCTCCTAGCATGGCATGAGCTAGTGGTGTGCTCCGTGCAGGCTGACTCTGTCATGCGCAAGCGGTTCAACACCACCTTCTCACAACACCAGCAACAACAGCAAGCCAATGTTCAATCTAATCAAAACCAAATTAAAGAAGAAAAGTTAAAATTACACGAAATCATTAAAAACGTTCTCAAACGCTACACACACTGCCTGAAAATGGACTCTTATGTGCAACTTGTCTGCCAGCGATGTGACAACAAAACCGCTTTGACGGCCGATGACTTCACCGACCACCTCACGACGCACCATTCAGGTGTACTCAATGAGAATGACGTAAATTCGTTCATAAAAGAACACGTTACGTTCGAAGAACCGCTCGTTTCCGACTTGGAATCGGATAAAGATGATAGAGATGATTCTGATGTTAAAGACTCGGTAAAAGACCTAAAAAAGAGAGAGCTGTCTACTTTACTGTGTCCATACTGCGACAGCGCCTTCTCGTCCACCTCCAGGCTCGTGTACCACCTCGGGAAACATATGGAGATTTCTATAGAAGACGGCGTACAGTGTTGTGAAATCGTCTACAATACTAAGAAAGATTTCGTTGTCCATCTACAAGAAAAACATGTCAACAGATTCATATATGACACGGAGACTATGTGCAAAAGCTGTAACTTCACCGCGGAATCGATAGAACAACTACGGAATCATGTCCGAGAGTGTCATAGCGTGAATACAGTTAAAAAGAGAAAGGAAATGAGCGCCAAAAATCAGAAGTGTATTCCTGCCGTGTGTCCAGAATGCAACAAGACATTTTCTAACAAATACAACATGTTCACTCACATGAAGTCGCACGACGAGACCCCGACGCACGCCTGCCGCAGATGCGGCAAACGATATAGCACGAAGGGGAACTTACGACACCACATAAAGTTGATACACGAGGGAGTGCTGTCGCACGTCTGCGGCGCGTGCGGGGAGCGGTTCCCCACGCGCCTGGCACGCGACGTTCACGCTCGGTTGCACACGGGAGCCAAACCTTTCCGGTGCGAGCTGTGCGGCGCCGCCTTCCGCGCCGGGGACTCGCTCCTGCGGCACCTCGACGCGCACCTCGACGTGCGGAGACACGAGTGCGCTCTCTGCAGCAGAACGAGCGGCCGACGCGACTCGGGCGTCAAACGGGCACGCGCGAACGACGATGTCGGGCTCGGAGCCGCGGGGGAGGGGGCGGAGGGGGAGACGCGCGACTCGGACGACTCGGAGGAACGGCCGCTCGCGACATTCGTCGTCGACAAAGAGGAGGCGTTTCTCGCGTTCTACGACGCGCTCGTGCGCTACCGAGACCACGTCGCGACCGAGCACGCTCCTCTCGCGCCCGAGTCGGACTCGAGCGCGGCGAGCGAGGGAGAGGGGAGGACCGCCGGGGCGGACGCGTACGACGACCTGTCGCCCCGCAACCGGCGGCGCTCGCGGCTCGGCGCGGAGCTGGCGGCCGCGCGCGTGCGCTCCGCCGCCGGCCGGCCCGCCTACCGCTGCTCCGCGTGCGGGAAGCAGCTGAGCTCGGCGCACACGCTCATATTCCACCGGCGGATCCACACCGGGGAGCGGCCCTGCGTGTGCCACGTGTGCGGGGCGCAGTTCCGCGCGGCGCCCGGCCTCCGGCGCcacctgcaggagacgcacgagcgccggcgccgcgtcgcgtgccgcacctgcgcgcggaccttcgccaacgcgcagaacttgaagcagcacatgaggatacacaccggggagcggccgtacgagtgcgccgtctgcgggaagacgttcgcccagagcgggtcgctgcacgcgcaccgcgcCGTGCACCGCGAGGCGCGCCCGCACGCCTGCGCCGAGTGCGGGGCCGCCTTCCGCCTGCGGGGGGGGCTCGCGCGCCACCGCCTGCGCCACTCGGGCGAGCGGCCGCACGCCTGCGGGCTCTGCCCCCGCGCCTTCCGCGCGCGGCACGAGGCGCGCGCGCACCGCGCCGCGCACGGGGACGCGCGCCCGCACGCCTGCGCCCTGTGCCCCGCCGCCTTCCGCCTGCGCCGCGCGCTGCGCCACCACCAGCGGCGGCTGCACCACCCGGCCGCGCCCCCGCCCCCGCCCCCGCAGACCCCGCTCGGGGACCTCGCGCCGCCTTATTAA
- Protein Sequence
- MNIGTEQVFIVNATELDQQNQHAPTPLQLQQAFAMPLVVPMQPEEVQTSMCLAQSMGPLSRMQTCRLCATVTELVVPIFQGEGLQNSLADKIHQHLPIQVSENDLLPVVMCFQCTSTLLAWHELVVCSVQADSVMRKRFNTTFSQHQQQQQANVQSNQNQIKEEKLKLHEIIKNVLKRYTHCLKMDSYVQLVCQRCDNKTALTADDFTDHLTTHHSGVLNENDVNSFIKEHVTFEEPLVSDLESDKDDRDDSDVKDSVKDLKKRELSTLLCPYCDSAFSSTSRLVYHLGKHMEISIEDGVQCCEIVYNTKKDFVVHLQEKHVNRFIYDTETMCKSCNFTAESIEQLRNHVRECHSVNTVKKRKEMSAKNQKCIPAVCPECNKTFSNKYNMFTHMKSHDETPTHACRRCGKRYSTKGNLRHHIKLIHEGVLSHVCGACGERFPTRLARDVHARLHTGAKPFRCELCGAAFRAGDSLLRHLDAHLDVRRHECALCSRTSGRRDSGVKRARANDDVGLGAAGEGAEGETRDSDDSEERPLATFVVDKEEAFLAFYDALVRYRDHVATEHAPLAPESDSSAASEGEGRTAGADAYDDLSPRNRRRSRLGAELAAARVRSAAGRPAYRCSACGKQLSSAHTLIFHRRIHTGERPCVCHVCGAQFRAAPGLRRHLQETHERRRRVACRTCARTFANAQNLKQHMRIHTGERPYECAVCGKTFAQSGSLHAHRAVHREARPHACAECGAAFRLRGGLARHRLRHSGERPHACGLCPRAFRARHEARAHRAAHGDARPHACALCPAAFRLRRALRHHQRRLHHPAAPPPPPPQTPLGDLAPPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -