Ahis012759.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- znf711
- Assembly
- GCA_947579745.1
- Location
- OX388172.1:6811323-6820613[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 2.9 1.9e+02 3.1 0.1 1 8 258 265 258 280 0.69 2 24 0.034 2.1 9.2 5.0 1 23 310 332 310 332 0.96 3 24 0.0012 0.077 13.7 0.2 1 23 337 360 337 360 0.96 4 24 1.5 92 4.0 2.3 1 23 393 416 393 416 0.91 5 24 0.00011 0.0067 17.0 2.9 2 23 423 444 423 444 0.91 6 24 0.00016 0.01 16.5 2.2 1 23 451 474 451 474 0.97 7 24 1 65 4.5 1.3 3 23 619 639 618 639 0.93 8 24 3.7 2.3e+02 2.7 3.2 2 23 645 667 644 667 0.92 9 24 0.072 4.5 8.1 1.3 1 23 672 694 672 694 0.91 10 24 0.00089 0.056 14.1 0.2 1 23 729 752 729 752 0.93 11 24 0.00018 0.011 16.3 3.5 1 23 758 780 758 780 0.98 12 24 0.047 3 8.7 1.5 5 23 790 808 788 808 0.97 13 24 0.63 40 5.2 2.2 1 23 814 837 814 837 0.86 14 24 0.73 46 5.0 0.2 3 23 847 868 846 868 0.92 15 24 0.0019 0.12 13.1 0.4 2 21 978 997 977 998 0.92 16 24 1.4 86 4.1 0.0 3 23 1005 1026 1003 1026 0.94 17 24 0.47 30 5.6 0.6 2 23 1032 1054 1031 1054 0.95 18 24 7.5e-06 0.00047 20.7 3.4 1 23 1059 1081 1059 1081 0.98 19 24 0.44 27 5.7 3.2 2 20 1085 1103 1085 1104 0.94 20 24 4.3e-05 0.0027 18.3 0.4 1 23 1131 1154 1131 1154 0.95 21 24 0.024 1.5 9.6 1.2 1 23 1160 1182 1160 1182 0.91 22 24 0.11 7 7.5 0.1 1 23 1188 1210 1188 1210 0.97 23 24 0.0068 0.43 11.4 0.6 1 23 1216 1239 1216 1239 0.94 24 24 6.3e-05 0.004 17.7 0.4 2 23 1246 1268 1245 1268 0.95
Sequence Information
- Coding Sequence
- ATGAACCGGCAAGTGGATGTAAAAGCACTCGTGTCTCATATCATCAAGGGTGATGGCCTGGAAAAATGCCGAATTTGCATGGGCGACACATCACAAGGGCAAGTGCATCTTGGAGACACCGTGATGATGGACGGAGACAAGCCTGTGACGCTGTCTGAGCTCCTAGAATTGATCACAGGAGTCACGGTACTCACGGAAGAAGCCCTGCCACCAGCGTTATGCTTAGAATGCTCCTCATCAGCTATCCAGGCAGCAGACTTCCGTACGATTGTCCAAAATGCCAACCATCAATGGACAAATATGTCACAACTTTTGGAACACATCCCTGATCACCAATACTCCAGAAACAGTGACAGAATCTGGTCTATTCTACGTAACAATGATATTTACATATCGGATTTATGCACCAAACCTTCTCAACGTGAAGACATTGAATGGACGTCCCTCCTGCCGTCTCGCCTCTGCCGAGCCTGCTCCACTTCCATCACCGACTTTATGCCATTCTTCGTACTCTGCCGAGAATCCGCATATAGATGGAAACAAACCGTCAACTATCTGAGCACGGTGTCTGCTAACAAACAGGCCACCACAGCTTACGTGTTACTGGGCGACGAGCCCCAGACCGTGGTAGACAGGAGCACCACCAAAAACAAAACCCCCAAAGAAGTCCTCAGGAATATAAGGCTGCGTCTCAATTATATACGTTCTTCGCGGAAAAGGTCAAGGGCGAAAGCACAGATGACGATATGCAAGCGGAGAGGTTCCCACAAATTCTCGTGTCCGGATTGCAAGAAAGGCGGATTCGCAGTGTTATACAAGTTCAATGCACACTTGAACATCAATAAGAGGCATTGCTGTTCGCAATGCTTCTCAATAATCAACATAGACGAGATCGGGGAGCATCTCGCTTCACACAACTTACCCAGTTTCGAGTGTGACGTTTGCCATTTACATTTCGAAAAGGAAACTAGTTTGCAAAGGCACAAAACCTATCACAACAAAGGGAAATATATGTGTCCGGAATGCAAATACACTTATGTGTCGATGGACGGATTGACCATCCACACGAATTATGTCCACACGAAAATTCAGTGCGCCTGCGGCAAGATGTTCCACGGCAAAGGCTGTTATTACATACACAAAAGAAGGGTGTGCCCCAAGAAACGTACGCAGGACTACATCTGTGACTTTTGTTCCAGAGGATTCAAAAAGAAATGCATTTTAGGGAAACACATCGAAAACAGTCACATTATAAATTATAGTGAACAATGCGATAAATGCGGTAAAAGGTTTAAAAGTAAGGCGCATTTGAAGGAGCACAGCTATGCGCACGACAAGGTGCTGGACCGGTTCACTTGCGAATACTGCGGAAACAAATACAGCACCCCGAGAGGATACAGAAGGCATATGACTAGGAAACATTATCAAGTCAACCCTGAGTTGTATCAGAAGAAGAAGTATCCTTGTGATGTTTGCGATAAGGTAGACGAGGAGACAGACCTGCCACCCGGCCTGTGCCGGGATTGCACTGAGGACATCATTACCGCTGTCACCTTCAAGCAGCTGTTCAAGCAATCAAATCAGTACTGGGAAGAAGCTGTCAATTACCTAACATGCATTGACGACCCTGCCGTCGAAGATAAGACGTTAATCCTCTTCTATCCTGAAGAAAAACCAGTCTACAACATCAAAGAACCTGCGCCCACCACTGAATGCGCCTTGGATGTCCTCAACAAACCAAAACGGGTTAAAATTAAAAACAAACGCTTCTCGTGCTGCTGCCCAAATTGTACAAAAAAATTTAGTTGCATAGAAAAATTGAACGAGCACTTCAGGTTCACGTTGCAGAGATTCTGTCACGAATGCGGTACTGGCGTCAATAAGAAACGATTAGCTAAACATCTGTTAAATGTACACAAGATAGAAGTATTGGAGTGCAAGTCTTGTCACGATGTATTTCGAAATCACGCTGAAACTCGGAGGCATTGGGTGAAGTATCATGGCGCTGGAACGCATTCTTGTTCGTTCTGCGGTACTGGATTTCAAAGCGAACGAGGTCTCAGAGCTCACAGCTACTTGCACACGCTCTTCAATTGCCCCTGTGGCTTAACTTTTGAAAACGCTCGATGTCACAAGTACCACATTTCCATCTGCAAACCGAATAAGCACATACTCGAATCTAATTTCGAATGCGATTATTGCGGAGTTGTTTACGACAAAAAACCTTCTCTACGCACCCACATCGTTCAAAAACACCTTTACGTACTCCCATTCGTGTGTCAAACATGCGGGAAGCGAACATCTACTCTTAATCATTTGAGGTCTCACGAGAAAACTCACGAAACCGAGCGGAAGGTTCTGGAATGCCATTGCGGAGCTAAATTTCGATCCAATTTAGGATACAAATTGCATATGCGGATTCACTCGGGGGATAAACCTTTCAAATGTAACCATTGCGAGGAAAGCTTCCTATCTGCGTCTAGAAGACTAGACCATGTGAAGAGACGACATCAGTCTTCGAAAGAGATGCCCCACGGTTGCAGTGAATGTAGCGCCAAGTTCTTAAGACCGTGGGAGCTTAAAAAGCATAGTTTGAACGCCCATGGTTCAGTCATACTAGAAGAAGATTCTTGCCCGATCGGCGCTTGCGTAGGATGCGCGAGCGCAGCGCTCTCCGCGCAAGAGTTCCGCTTATTCGTACGCAACTCGGAGAAACTCTGGTACAAAGCCATCTTCAACCTCGCCAACATCGAAAACGAACATGAAGACCGAGCAAAATCCATATGCGCCTTCGTTTCACCCAACGACTTAACTGTCCTAATCGCCAAAGACTACACGGGAGGCGAACCAAAAGAAGTTGTCAATCGTTCCAAAACTACCGTCAAAAAAAAGAAACGGAAAGCCAGACGTCACCATACGGGACCCATGACCACTTGCCCAGACTGTAGCAAAACATTTATGAGCCCGTTTCTCCTGCAAGAGCATTTTAAAAACAACGGTCCTAAGACGGCTTGCGCGACTTGCGGGGCTGTGGTACCTAGGGGTCCAGAATTAATAGAACATATGGCTTCTGCTCACAAAGAGGTCTTAACTATGTGTCCCCAGTGCCCTTGCTTACTTAAAAACGATGAAGAGTTGAGTCAGCATTTGAGAAACGCTCACAGGACAGGCGCTTACACTTGTTCAGATTGCGGACGGACCTTCCCAAGGAAGTCTACCTTCGAGCATCATTCGCAAATGCACGTCGTTAGAACATGCCGCAGTTGTAACAGGCAGTTCACGAACAGAAGCTGCTATAGAGAGCACAGGGTACAATGCGAGCCCGACGCCAAGCCGGACAAAAGCACTGTACCCAGAAACCGACGTTCGAACATCCGGGACCCTGCTGTATTTATCTGCGATTACTGCAATAAGAAATACGTAACGCGTCCTCAGTTAAAAAACCATATACTCTGGATCCATATGGATCACAGACCTCATCAGTGCCAGTGGTGTGGGAAGAGGTTTTTTACTTTTGGAAGATTGGCAGAGCACTCTGTGGTCCACACGCGCGTGCGGAACTTCGAGTGCGACATTTGTGGCGCGAAATTGGTTTCCAAAATGGCGGCCGTCTACCATAGACGACGTCACACGGGGGAAAAACCGTACAAATGCGAAGACTGCGACGCTTCCTTCATATCCTCGTCGCGTAGACTCGAACACGCTAAACGAAAACATAATAAAGGGACTAGAGTCCAGTGCCAGCTCTGTCCGAATAATTTTGTGCGAAAAAGCGAGCTTAAAAGGCATATGGTTAAAGCTCATAGTACTGCAGATGAGGGGAAGGTGGAAAAAAATAACGACATTTTGAAGGATTGGAGGGCGGGATCAGAACCACCCAAATTGGAAAGTGTCGTGACAATGTAG
- Protein Sequence
- MNRQVDVKALVSHIIKGDGLEKCRICMGDTSQGQVHLGDTVMMDGDKPVTLSELLELITGVTVLTEEALPPALCLECSSSAIQAADFRTIVQNANHQWTNMSQLLEHIPDHQYSRNSDRIWSILRNNDIYISDLCTKPSQREDIEWTSLLPSRLCRACSTSITDFMPFFVLCRESAYRWKQTVNYLSTVSANKQATTAYVLLGDEPQTVVDRSTTKNKTPKEVLRNIRLRLNYIRSSRKRSRAKAQMTICKRRGSHKFSCPDCKKGGFAVLYKFNAHLNINKRHCCSQCFSIINIDEIGEHLASHNLPSFECDVCHLHFEKETSLQRHKTYHNKGKYMCPECKYTYVSMDGLTIHTNYVHTKIQCACGKMFHGKGCYYIHKRRVCPKKRTQDYICDFCSRGFKKKCILGKHIENSHIINYSEQCDKCGKRFKSKAHLKEHSYAHDKVLDRFTCEYCGNKYSTPRGYRRHMTRKHYQVNPELYQKKKYPCDVCDKVDEETDLPPGLCRDCTEDIITAVTFKQLFKQSNQYWEEAVNYLTCIDDPAVEDKTLILFYPEEKPVYNIKEPAPTTECALDVLNKPKRVKIKNKRFSCCCPNCTKKFSCIEKLNEHFRFTLQRFCHECGTGVNKKRLAKHLLNVHKIEVLECKSCHDVFRNHAETRRHWVKYHGAGTHSCSFCGTGFQSERGLRAHSYLHTLFNCPCGLTFENARCHKYHISICKPNKHILESNFECDYCGVVYDKKPSLRTHIVQKHLYVLPFVCQTCGKRTSTLNHLRSHEKTHETERKVLECHCGAKFRSNLGYKLHMRIHSGDKPFKCNHCEESFLSASRRLDHVKRRHQSSKEMPHGCSECSAKFLRPWELKKHSLNAHGSVILEEDSCPIGACVGCASAALSAQEFRLFVRNSEKLWYKAIFNLANIENEHEDRAKSICAFVSPNDLTVLIAKDYTGGEPKEVVNRSKTTVKKKKRKARRHHTGPMTTCPDCSKTFMSPFLLQEHFKNNGPKTACATCGAVVPRGPELIEHMASAHKEVLTMCPQCPCLLKNDEELSQHLRNAHRTGAYTCSDCGRTFPRKSTFEHHSQMHVVRTCRSCNRQFTNRSCYREHRVQCEPDAKPDKSTVPRNRRSNIRDPAVFICDYCNKKYVTRPQLKNHILWIHMDHRPHQCQWCGKRFFTFGRLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGEKPYKCEDCDASFISSSRRLEHAKRKHNKGTRVQCQLCPNNFVRKSELKRHMVKAHSTADEGKVEKNNDILKDWRAGSEPPKLESVVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -